Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INQ42_RS08445 Genome accession   NZ_CP063657
Coordinates   1873876..1874973 (-) Length   365 a.a.
NCBI ID   WP_228062459.1    Uniprot ID   -
Organism   Novilysobacter avium strain H23M41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1868876..1879973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ42_RS08430 (INQ42_08430) csrA 1870175..1870387 (-) 213 WP_194033884.1 carbon storage regulator CsrA -
  INQ42_RS08435 (INQ42_08435) alaS 1870543..1873218 (-) 2676 WP_194033885.1 alanine--tRNA ligase -
  INQ42_RS08440 (INQ42_08440) recX 1873299..1873805 (-) 507 WP_407070807.1 recombination regulator RecX -
  INQ42_RS08445 (INQ42_08445) recA 1873876..1874973 (-) 1098 WP_228062459.1 recombinase RecA Machinery gene
  INQ42_RS08450 (INQ42_08450) lexA 1875164..1875850 (-) 687 WP_194033887.1 transcriptional repressor LexA -
  INQ42_RS08455 (INQ42_08455) - 1875907..1876407 (-) 501 WP_194033888.1 CinA family protein -
  INQ42_RS08460 (INQ42_08460) - 1876512..1879106 (-) 2595 WP_194033889.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39201.22 Da        Isoelectric Point: 5.4190

>NTDB_id=496144 INQ42_RS08445 WP_228062459.1 1873876..1874973(-) (recA) [Novilysobacter avium strain H23M41]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPTYAAKLGVNVEDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRHKIGQMMPGQSPEVTTGGNALKFYASVRLDIRRIGAVKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIEMGLEAKLVERAGAWYSMGEERIGQGKENARQYLKDNVELAERL
EAEIRKRLVPIEIVKAEAAAAGTEDEEDAKDAKVGKPAKGAKAEV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=496144 INQ42_RS08445 WP_228062459.1 1873876..1874973(-) (recA) [Novilysobacter avium strain H23M41]
ATGGACGAGAACAAAAAGCGCGCTCTTTCCGCGGCCTTGGGCCAGATCGAGAAGCAGTTTGGCAAGGGTTCGGTCATGCG
CATGGGCGACCGTGTCGTGGAGGCCGCCGAGGTCATCGGCACCGGTTCGCTGATGCTGGACATCGCGCTCGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCGATTGCC
GAGTGCCAGAAGATGGGCGGCACCGCTGCGTTCATCGACGCCGAGCACGCCCTCGATCCGACCTACGCCGCCAAGCTGGG
CGTGAATGTTGAAGACCTGCTGCTCTCGCAGCCCGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CCGCCGCGGTGGACATCGTGGTGATCGACTCGGTCGCCGCGCTCACCCCACGGGCCGAGATCGAGGGCGAGATGGGCGAC
CAGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCGGCACCCT
GGTGGTCTTCATCAACCAGCTGCGCCACAAGATCGGCCAGATGATGCCGGGCCAGAGCCCGGAGGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTATCGGCGCGGTCAAGAAGGGCGATGAGATCATCGGC
AACCAGACCCGCATCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTCTACGGCGA
GGGCATCTCGCGCGAGGGCGAGCTGATCGAGATGGGCCTGGAGGCCAAGCTGGTCGAGCGTGCAGGCGCCTGGTACAGCA
TGGGCGAGGAGCGCATCGGCCAGGGCAAGGAGAACGCCCGCCAGTACCTCAAGGACAACGTCGAACTGGCCGAGCGCCTG
GAAGCCGAGATCCGCAAGCGTCTGGTGCCCATCGAGATCGTCAAGGCGGAAGCCGCGGCGGCGGGTACGGAAGACGAAGA
GGATGCCAAGGACGCCAAGGTCGGCAAGCCGGCTAAGGGCGCCAAGGCCGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.797

96.986

0.658
  recA Acinetobacter baylyi ADP1

66.382

96.164

0.638
  recA Acinetobacter baumannii D1279779

66.954

95.342

0.638
  recA Ralstonia pseudosolanacearum GMI1000

72.843

85.753

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.029

94.795

0.616
  recA Vibrio cholerae strain A1552

65.029

94.795

0.616
  recA Neisseria gonorrhoeae MS11

63.818

96.164

0.614
  recA Neisseria gonorrhoeae MS11

63.818

96.164

0.614
  recA Neisseria gonorrhoeae strain FA1090

63.818

96.164

0.614
  recA Glaesserella parasuis strain SC1401

63.533

96.164

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.078

95.068

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

91.233

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

62.037

88.767

0.551
  recA Streptococcus mutans UA159

57.102

96.438

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

88.493

0.545
  recA Streptococcus mitis SK321

57.225

94.795

0.542
  recA Helicobacter pylori strain NCTC11637

60.061

89.863

0.54
  recA Streptococcus mitis NCTC 12261

56.936

94.795

0.54
  recA Helicobacter pylori 26695

59.756

89.863

0.537
  recA Streptococcus pneumoniae D39

58.232

89.863

0.523
  recA Streptococcus pneumoniae Rx1

58.232

89.863

0.523
  recA Streptococcus pneumoniae R6

58.232

89.863

0.523
  recA Streptococcus pneumoniae TIGR4

58.232

89.863

0.523
  recA Streptococcus pyogenes NZ131

57.879

90.411

0.523
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

89.315

0.515
  recA Lactococcus lactis subsp. cremoris KW2

56.923

89.041

0.507