Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IM701_RS11730 Genome accession   NZ_CP063445
Coordinates   2413007..2414077 (-) Length   356 a.a.
NCBI ID   WP_039334323.1    Uniprot ID   A0A7X8NQD2
Organism   Novosphingobium sp. ES2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2408007..2419077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM701_RS11710 (IM701_11710) - 2408536..2408703 (+) 168 WP_156135766.1 hypothetical protein -
  IM701_RS11715 (IM701_11715) alaS 2408707..2411352 (-) 2646 WP_193827036.1 alanine--tRNA ligase -
  IM701_RS11720 (IM701_11720) - 2411396..2412220 (-) 825 WP_193827037.1 trans-aconitate 2-methyltransferase -
  IM701_RS11725 (IM701_11725) - 2412224..2412850 (-) 627 WP_193827038.1 glutathione S-transferase family protein -
  IM701_RS11730 (IM701_11730) recA 2413007..2414077 (-) 1071 WP_039334323.1 recombinase RecA Machinery gene
  IM701_RS11735 (IM701_11735) - 2414440..2415234 (+) 795 WP_193827039.1 helix-turn-helix domain-containing protein -
  IM701_RS11740 (IM701_11740) gdhA 2415302..2416657 (-) 1356 WP_039334327.1 NADP-specific glutamate dehydrogenase -
  IM701_RS11745 (IM701_11745) - 2416821..2417633 (-) 813 WP_193827040.1 SRPBCC domain-containing protein -
  IM701_RS11750 (IM701_11750) - 2417679..2418329 (-) 651 WP_039334332.1 adenylate kinase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38270.92 Da        Isoelectric Point: 5.8956

>NTDB_id=495669 IM701_RS11730 WP_039334323.1 2413007..2414077(-) (recA) [Novosphingobium sp. ES2-1]
MAAQLKLIEEGKIKDMDRQKALDAALAQIDRAFGKGSAMKLGSKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEVYGPE
SSGKTTLALHVIAQAQKTGGTAAFIDAEHALDPVYAKKLGVDIDNLIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDEIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKNF
LRENSELCDRLEAAIRGRTDKVAEGLMVGPDADDDV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=495669 IM701_RS11730 WP_039334323.1 2413007..2414077(-) (recA) [Novosphingobium sp. ES2-1]
ATGGCGGCTCAGCTCAAGCTCATCGAGGAAGGTAAGATCAAGGACATGGATCGTCAGAAGGCGCTCGACGCAGCCCTTGC
ACAGATTGACCGTGCGTTCGGCAAGGGTTCGGCAATGAAGCTGGGCTCGAAGGAAGCGATGCAGGTGGAGGCGATCTCCA
CCGGGTCGCTGGGGCTTGATATCGCACTCGGTGTCGGCGGTCTGCCGCGCGGACGCGTGATCGAAGTCTATGGGCCGGAA
AGCTCGGGCAAGACCACGCTCGCGCTGCACGTCATCGCCCAGGCCCAGAAGACCGGTGGCACGGCGGCATTCATCGATGC
CGAGCATGCGCTCGACCCGGTCTATGCCAAGAAGCTGGGTGTCGATATCGACAACCTGATCGTGTCGCAGCCGGATACTG
GCGAACAGGCGCTGGAAATCACCGACACGCTGGTGCGCTCCAACGCGATCGACGTGCTGGTGGTGGACTCCGTGGCCGCG
CTCGTGCCGCGTGCGGAAATCGAAGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAGCCAGTCGTT
GCGCAAGCTGACCGGTTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGA
TGTACGGCAACCCCGAGACGACGACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCACC
GGCCAGATCAAGGATCGTGACGAGATCGTCGGCAACGCCACGCGCGTGAAGGTGGTCAAGAACAAGGTGGCTCCGCCGTT
CAAGCAGGTTGAATTCGACATCATGTATGGCGAAGGCATCTCGAAGATCGGCGAAATCCTCGACCTCGGCGTCAAGGCCG
GGCTGGTCGAGAAGTCGGGTGCCTGGTTCAGTTATGACTCGATCCGCATCGGGCAGGGGCGCGAGAACGCCAAGAACTTC
CTGCGCGAGAATTCCGAACTTTGCGACCGGTTGGAAGCCGCGATCCGCGGCCGCACCGACAAGGTTGCCGAAGGTCTGAT
GGTCGGTCCGGACGCGGACGACGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X8NQD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.059

95.506

0.64
  recA Vibrio cholerae strain A1552

69.565

90.449

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.565

90.449

0.629
  recA Glaesserella parasuis strain SC1401

68.615

91.292

0.626
  recA Neisseria gonorrhoeae MS11

69.159

90.169

0.624
  recA Neisseria gonorrhoeae MS11

69.159

90.169

0.624
  recA Neisseria gonorrhoeae strain FA1090

69.159

90.169

0.624
  recA Acinetobacter baumannii D1279779

68.323

90.449

0.618
  recA Ralstonia pseudosolanacearum GMI1000

71.104

86.517

0.615
  recA Acinetobacter baylyi ADP1

68.012

90.449

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

67.188

89.888

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.05

95.787

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

91.573

0.601
  recA Helicobacter pylori strain NCTC11637

65.015

90.73

0.59
  recA Helicobacter pylori 26695

64.706

90.73

0.587
  recA Streptococcus mitis SK321

59.544

98.596

0.587
  recA Streptococcus pneumoniae TIGR4

60.641

96.348

0.584
  recA Streptococcus pneumoniae D39

60.641

96.348

0.584
  recA Streptococcus pneumoniae R6

60.641

96.348

0.584
  recA Streptococcus pneumoniae Rx1

60.641

96.348

0.584
  recA Streptococcus pyogenes NZ131

60.704

95.787

0.581
  recA Streptococcus mitis NCTC 12261

61.194

94.101

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

89.888

0.573
  recA Streptococcus mutans UA159

59.531

95.787

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

91.292

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.507

94.101

0.551