Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IP582_RS19815 Genome accession   NZ_CP063427
Coordinates   4210505..4211569 (-) Length   354 a.a.
NCBI ID   WP_039077622.1    Uniprot ID   A0AAC8QLG4
Organism   Citrobacter sp. BDA59-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4205505..4216569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP582_RS19800 (IP582_19800) csrA 4206749..4206934 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  IP582_RS19805 (IP582_19805) alaS 4207178..4209805 (-) 2628 WP_193794208.1 alanine--tRNA ligase -
  IP582_RS19810 (IP582_19810) recX 4209935..4210435 (-) 501 WP_193794209.1 recombination regulator RecX -
  IP582_RS19815 (IP582_19815) recA 4210505..4211569 (-) 1065 WP_039077622.1 recombinase RecA Machinery gene
  IP582_RS19820 (IP582_19820) pncC 4211659..4212156 (-) 498 WP_039077623.1 nicotinamide-nucleotide amidase -
  IP582_RS19825 (IP582_19825) - 4212281..4213159 (-) 879 WP_193794210.1 metal ABC transporter substrate-binding protein -
  IP582_RS19830 (IP582_19830) - 4213159..4214022 (-) 864 WP_193794211.1 metal ABC transporter permease -
  IP582_RS19835 (IP582_19835) - 4214019..4214696 (-) 678 WP_193794212.1 metal ABC transporter ATP-binding protein -
  IP582_RS19840 (IP582_19840) mltB 4214923..4216020 (-) 1098 WP_193794213.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37934.21 Da        Isoelectric Point: 4.7494

>NTDB_id=495614 IP582_RS19815 WP_039077622.1 4210505..4211569(-) (recA) [Citrobacter sp. BDA59-3]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKVREILLSNPSSGADFSVDDSGEGVEETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=495614 IP582_RS19815 WP_039077622.1 4210505..4211569(-) (recA) [Citrobacter sp. BDA59-3]
ATGGCTATCGACGAAAACAAACAAAAGGCGCTTGCGGCCGCACTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCTATGGATGTCGAAACGATCTCCACCGGTTCACTTTCGCTGGATATCGCACTGGGTG
CGGGCGGTCTGCCAATGGGCCGTATTGTTGAAATTTACGGGCCAGAATCGTCCGGTAAAACGACGTTGACCCTCCAGGTT
ATTGCCGCGGCACAGCGTGAAGGTAAAACCTGTGCGTTTATCGACGCCGAACACGCTCTGGACCCTGTATACGCACGTAA
GCTGGGCGTTGATATCGACAACCTGCTGTGTTCTCAGCCTGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CACGCTCTGGTGCCGTTGACGTTATCGTTGTCGACTCCGTTGCGGCGCTGACGCCGAAAGCAGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCAGGTAACCTTAAGCAGTCCAA
CACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATTGGCGTCATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTGGATATTCGTCGCGTTGGCGCGGTGAAAGAGGGCGACAATGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAAATCGCTGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATTAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGAGAAAATCGGTCAGGGTAAAGCGAATGCGACAAACTGGCTGAAAGAAAACCCGGCAACGGCGAAAGAAATC
GAGAAGAAAGTTCGTGAGATCCTGCTCAGCAATCCTTCCTCCGGTGCCGATTTCTCGGTGGACGACAGCGGTGAAGGTGT
CGAAGAAACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.639

93.785

0.794
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.639

93.785

0.794
  recA Pseudomonas stutzeri DSM 10701

75.535

92.373

0.698
  recA Acinetobacter baumannii D1279779

73.653

94.35

0.695
  recA Glaesserella parasuis strain SC1401

69.801

99.153

0.692
  recA Acinetobacter baylyi ADP1

73.716

93.503

0.689
  recA Neisseria gonorrhoeae MS11

69.018

92.09

0.636
  recA Neisseria gonorrhoeae MS11

69.018

92.09

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.09

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.476

88.983

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60

97.458

0.585
  recA Helicobacter pylori strain NCTC11637

62.048

93.785

0.582
  recA Helicobacter pylori 26695

61.747

93.785

0.579
  recA Lactococcus lactis subsp. cremoris KW2

63.158

91.243

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus mitis NCTC 12261

62.848

91.243

0.573
  recA Streptococcus mitis SK321

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551