Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IM737_RS04900 Genome accession   NZ_CP063401
Coordinates   985337..986413 (-) Length   358 a.a.
NCBI ID   WP_236898782.1    Uniprot ID   -
Organism   Devosia sp. SL43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 980337..991413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM737_RS04885 (IM737_04875) - 980543..981475 (+) 933 WP_236898779.1 DMT family transporter -
  IM737_RS04890 (IM737_04880) - 981572..982456 (+) 885 WP_236898780.1 DMT family transporter -
  IM737_RS04895 (IM737_04885) alaS 982499..985156 (-) 2658 WP_236898781.1 alanine--tRNA ligase -
  IM737_RS04900 (IM737_04890) recA 985337..986413 (-) 1077 WP_236898782.1 recombinase RecA Machinery gene
  IM737_RS04905 (IM737_04895) araD1 986682..987677 (+) 996 WP_236898783.1 AraD1 family protein -
  IM737_RS04910 (IM737_04900) - 987731..988750 (+) 1020 WP_236898784.1 aldo/keto reductase -
  IM737_RS04915 (IM737_04905) - 988810..989160 (+) 351 WP_236898785.1 metalloregulator ArsR/SmtB family transcription factor -
  IM737_RS04920 (IM737_04910) - 989172..989663 (+) 492 WP_236898787.1 SRPBCC family protein -
  IM737_RS04925 (IM737_04915) - 989670..989855 (+) 186 WP_236898789.1 hypothetical protein -
  IM737_RS04930 (IM737_04920) - 989864..990259 (-) 396 WP_236898791.1 DUF2237 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37879.25 Da        Isoelectric Point: 4.7937

>NTDB_id=495448 IM737_RS04900 WP_236898782.1 985337..986413(-) (recA) [Devosia sp. SL43]
MANAPLRVVEGGSMDKDKALAAALSQIERNFGKGSIMRLGEASSIEVESISTGSLGLDIALGIGGLPKGRIVEIFGPESS
GKTTLALHVIAEAQKAGGICAFVDAEHALDPIYARKLGVSVDDLLISQPDAGEQALEITDTLVRSGAIDVLVVDSVAALT
PRAELEGEMGDSLPGLQARLMSQAMRKLTSSISKSKCLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGA
IKDREEIVGNQTRVKVVKNKLAPPFRQVEFDIMYGEGISKTGELLDLGVKSGVVEKSGAWFSYDSQRMGQGRENARQFLK
DNPAAAATIEQGVRESSGLLGEVLLVAGGDDDAGSDDE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=495448 IM737_RS04900 WP_236898782.1 985337..986413(-) (recA) [Devosia sp. SL43]
ATGGCTAACGCGCCGCTTCGTGTAGTTGAAGGTGGATCGATGGATAAGGACAAGGCACTTGCCGCGGCGCTCAGCCAGAT
CGAGCGCAATTTCGGCAAGGGCTCGATCATGCGCCTTGGCGAGGCATCGTCCATCGAAGTCGAGTCGATCTCGACCGGCT
CGCTTGGTCTCGATATCGCGTTGGGCATTGGCGGGCTGCCCAAGGGGCGTATCGTCGAAATCTTCGGGCCGGAAAGCTCG
GGCAAGACCACCTTGGCGCTGCATGTGATTGCCGAGGCCCAGAAGGCTGGCGGCATCTGCGCCTTCGTCGACGCCGAACA
TGCCCTCGACCCCATCTATGCCCGCAAGCTCGGCGTCAGCGTCGATGACCTGCTGATCTCGCAGCCTGATGCCGGCGAAC
AGGCCCTCGAAATCACCGATACTCTGGTCCGCTCCGGCGCCATTGACGTTCTGGTGGTTGATTCGGTGGCGGCACTGACG
CCTCGCGCCGAGCTGGAAGGCGAGATGGGCGACTCACTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCCATGCGCAA
GCTGACTTCGTCCATCTCCAAGTCCAAGTGCCTGGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTATG
GCTCGCCCGAGACCACGACCGGCGGTAACGCGCTCAAGTTCTATGCCTCGGTTCGCCTCGATATCCGTCGCATCGGCGCC
ATCAAGGATCGCGAAGAGATCGTTGGCAACCAGACCCGCGTGAAGGTGGTCAAGAACAAGCTGGCTCCGCCGTTCCGCCA
AGTCGAATTCGACATCATGTATGGCGAGGGTATTTCCAAGACCGGCGAGCTTCTCGATCTGGGCGTCAAGTCCGGTGTCG
TCGAGAAGTCAGGCGCCTGGTTCTCCTACGATAGCCAGCGCATGGGGCAGGGCCGCGAGAACGCTCGCCAGTTCCTCAAG
GACAATCCGGCGGCTGCAGCAACCATTGAGCAGGGGGTGCGCGAAAGCTCGGGCCTCCTCGGCGAAGTGCTGCTGGTGGC
AGGCGGCGATGACGACGCTGGTAGCGACGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.251

95.531

0.642
  recA Neisseria gonorrhoeae MS11

67.251

95.531

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.251

95.531

0.642
  recA Pseudomonas stutzeri DSM 10701

71.25

89.385

0.637
  recA Ralstonia pseudosolanacearum GMI1000

69.207

91.62

0.634
  recA Vibrio cholerae strain A1552

70.405

89.665

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.405

89.665

0.631
  recA Glaesserella parasuis strain SC1401

70.405

89.665

0.631
  recA Acinetobacter baylyi ADP1

65.889

95.81

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.848

95.81

0.612
  recA Acinetobacter baumannii D1279779

67.913

89.665

0.609
  recA Helicobacter pylori strain NCTC11637

64.048

92.458

0.592
  recA Helicobacter pylori 26695

64.048

92.458

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.526

91.341

0.589
  recA Streptococcus mitis NCTC 12261

59.654

96.927

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

63.692

90.782

0.578
  recA Streptococcus pneumoniae Rx1

59.078

96.927

0.573
  recA Streptococcus pneumoniae D39

59.078

96.927

0.573
  recA Streptococcus pneumoniae R6

59.078

96.927

0.573
  recA Streptococcus pneumoniae TIGR4

59.078

96.927

0.573
  recA Streptococcus mitis SK321

61.515

92.179

0.567
  recA Lactococcus lactis subsp. cremoris KW2

60.606

92.179

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

90.782

0.556
  recA Streptococcus mutans UA159

59.639

92.737

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.87

89.944

0.547
  recA Streptococcus pyogenes NZ131

60.185

90.503

0.545