Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IM739_RS13970 Genome accession   NZ_CP063397
Coordinates   2944267..2945352 (-) Length   361 a.a.
NCBI ID   WP_237368320.1    Uniprot ID   -
Organism   Rhizobium sp. SL42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2939267..2950352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM739_RS13960 (IM739_13925) - 2940056..2941288 (-) 1233 WP_237368318.1 GGDEF domain-containing protein -
  IM739_RS13965 (IM739_13930) alaS 2941451..2944111 (-) 2661 WP_237368319.1 alanine--tRNA ligase -
  IM739_RS13970 (IM739_13935) recA 2944267..2945352 (-) 1086 WP_237368320.1 recombinase RecA Machinery gene
  IM739_RS13975 (IM739_13940) - 2945594..2946538 (+) 945 WP_237368321.1 carbohydrate kinase family protein -
  IM739_RS13980 (IM739_13945) - 2946564..2947490 (+) 927 WP_237368322.1 pseudouridine-5'-phosphate glycosidase -
  IM739_RS13985 (IM739_13950) - 2947568..2950183 (-) 2616 WP_237368323.1 PAS domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38621.19 Da        Isoelectric Point: 5.1867

>NTDB_id=495424 IM739_RS13970 WP_237368320.1 2944267..2945352(-) (recA) [Rhizobium sp. SL42]
MAQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGANESVVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKDREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKLFL
RDNPALAQEIELALRQNAGLIAEKFLQNGGPDANDGDSAED

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=495424 IM739_RS13970 WP_237368320.1 2944267..2945352(-) (recA) [Rhizobium sp. SL42]
ATGGCACAGAATTCTTTGCGGTTGGTAGAGGACAAATCGGTGGATAAAAGCAAGGCATTGGAAGCGGCGCTCTCGCAGAT
CGAACGTTCGTTCGGCAAGGGCTCGATCATGAAGCTCGGCGCGAACGAGAGTGTGGTCGAAGTCGAGACTGTCTCGACGG
GATCGCTCAGCCTCGATATTGCGCTCGGTATCGGTGGTCTGCCGAAGGGCCGAATCATTGAAATCTATGGACCGGAAAGC
TCGGGCAAGACGACGCTTGCGCTGCAGACGATTGCCGAAGCGCAGAAAAAGGGCGGTATCTGCGCCTTCGTCGATGCCGA
GCACGCACTGGATCCGGTCTATGCCCGCAAGCTGGGTGTCGATCTGCAGAACCTGCTGATCTCGCAGCCGGATACCGGCG
AGCAGGCGCTCGAAATCACCGACACTTTGGTGCGCTCCGGCGCTGTCGATGTACTGGTTGTCGACTCTGTCGCGGCACTA
ACTCCGCGCGCCGAAATCGAAGGCGAGATGGGCGACAGTCTTCCGGGTCTGCAGGCGCGCCTTATGAGCCAGGCGTTGCG
CAAGCTCACCGCATCGATTTCCAAGTCGAAGACTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGTTCGCCGGAAACGACCACCGGCGGCAATGCACTGAAGTTCTATGCCTCGGTTCGCCTCGACATCCGCCGCATCGGC
GCGGTCAAGGATCGTGAAGAGGTTGTCGGCAACCAGACACGCGTCAAGGTCGTCAAGAACAAGATGGCACCTCCGTTCAA
GCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTTTCGAAGACCGGTGAGCTCGTCGATCTCGGCGTCAAGGCCGGCA
TTGTCGAGAAATCGGGTGCTTGGTTCTCCTACAATAGCCAACGTCTCGGCCAGGGGCGTGAAAATGCCAAGCTGTTCCTG
CGTGACAATCCGGCGCTTGCGCAGGAAATCGAACTTGCACTGCGCCAGAATGCCGGTCTGATCGCAGAGAAGTTCCTGCA
GAACGGTGGTCCCGACGCCAATGATGGCGATAGCGCCGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

66.476

96.676

0.643
  recA Neisseria gonorrhoeae MS11

66.476

96.676

0.643
  recA Neisseria gonorrhoeae strain FA1090

66.476

96.676

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.254

92.798

0.643
  recA Vibrio cholerae strain A1552

69.254

92.798

0.643
  recA Acinetobacter baumannii D1279779

71.739

89.197

0.64
  recA Acinetobacter baylyi ADP1

71.429

89.197

0.637
  recA Glaesserella parasuis strain SC1401

66.474

95.845

0.637
  recA Ralstonia pseudosolanacearum GMI1000

72.293

86.981

0.629
  recA Pseudomonas stutzeri DSM 10701

69.47

88.92

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

90.305

0.598
  recA Helicobacter pylori strain NCTC11637

65.951

90.305

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

90.582

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.749

90.582

0.596
  recA Helicobacter pylori 26695

65.644

90.305

0.593
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.615

87.812

0.576
  recA Streptococcus mitis SK321

62.236

91.69

0.571
  recA Streptococcus mitis NCTC 12261

62.236

91.69

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

62.997

90.582

0.571
  recA Streptococcus pneumoniae Rx1

61.934

91.69

0.568
  recA Streptococcus pneumoniae D39

61.934

91.69

0.568
  recA Streptococcus pneumoniae R6

61.934

91.69

0.568
  recA Streptococcus pneumoniae TIGR4

61.934

91.69

0.568
  recA Streptococcus pyogenes NZ131

61.398

91.136

0.56
  recA Streptococcus mutans UA159

60.36

92.244

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.701

92.798

0.554