Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IPU21_RS07925 Genome accession   NZ_CP063368
Coordinates   1677895..1678938 (-) Length   347 a.a.
NCBI ID   WP_019165446.1    Uniprot ID   A0A6P1WW13
Organism   Staphylococcus delphini strain 245-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672895..1683938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU21_RS07905 (IPU21_07925) - 1673028..1675202 (-) 2175 WP_212575493.1 heavy metal translocating P-type ATPase -
  IPU21_RS07910 (IPU21_07930) - 1675186..1675566 (-) 381 WP_096540852.1 ArsR/SmtB family transcription factor -
  IPU21_RS07915 (IPU21_07935) - 1675766..1675984 (+) 219 WP_096540850.1 hypothetical protein -
  IPU21_RS07920 (IPU21_07940) rny 1676108..1677667 (-) 1560 WP_019165445.1 ribonuclease Y -
  IPU21_RS07925 (IPU21_07945) recA 1677895..1678938 (-) 1044 WP_019165446.1 recombinase RecA Machinery gene
  IPU21_RS07930 (IPU21_07950) - 1679077..1680252 (-) 1176 WP_212574506.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  IPU21_RS07935 (IPU21_07955) pgsA 1680474..1681058 (-) 585 WP_096540844.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IPU21_RS07940 (IPU21_07960) - 1681099..1681494 (-) 396 WP_096540841.1 helix-turn-helix domain-containing protein -
  IPU21_RS07945 (IPU21_07965) - 1681512..1682357 (-) 846 WP_096540838.1 DUF3388 domain-containing protein -
  IPU21_RS07950 (IPU21_07970) ymfI 1682414..1683118 (-) 705 WP_096540835.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37967.04 Da        Isoelectric Point: 5.0169

>NTDB_id=494810 IPU21_RS07925 WP_019165446.1 1677895..1678938(-) (recA) [Staphylococcus delphini strain 245-1]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLLENPKLEDEIDR
KLREKLGIYDGDVEEPEQEETQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=494810 IPU21_RS07925 WP_019165446.1 1677895..1678938(-) (recA) [Staphylococcus delphini strain 245-1]
TTGGATAATGAACGTCAAAAAGCGCTAGATACAGTAATTAAAAACATGGAAAAATCATTTGGTAAAGGTGCCGTAATGAA
ACTGGGCGAGAATAAAGATCGCCGTGTTTCAAGTGTTTCAAGTGGTTCGGTAACGCTAGACCATGCATTAGGGGTTGGCG
GCTATCCTAAAGGTCGTATCATCGAAGTTTATGGCCCCGAAAGTTCTGGTAAAACTACAGTTGCTTTACATGCCATTGCT
GAAGTACAAAAAAATGGCGGTATTGCTGCATTTATTGATGCCGAACACGCACTCGATCCAGTTTACGCTGAAGCATTAGG
TGTAGATATTGATAACTTATACCTTTCACAACCAGACCACGGTGAACAAGGGCTTGAAATTGCAGAGGCGTTTGTCAGAA
GTGGCGCAGTGGATATTATCATTGTCGACTCAGTTGCGGCATTGACACCTAAAGCTGAAATTGAAGGTGAAATGGGTGAT
ACGCACGTGGGTTTACAAGCGCGTTTAATGTCTCAAGCATTGCGTAAACTTTCTGCAGCCATTTCAAAATCAAAAACGAC
AGCTATCTTTATTAACCAAATCCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGGGGCCGTGCTC
TGAAATTCTACAGCTCAGTTCGTTTAGAAGTGCGTCGTGCCGAGCAATTGAAACAAGGTCAAGATATTGTAGGTAACCGT
ACTAAAATTAAAGTGGTTAAAAATAAAGTTGCACCACCATTCAAAGTCGCAGAAGTGGATATCATGTATGGTAAAGGGAT
TTCACGTGAAGGCGAATTGATTGATTTAGGTGTACAATACGACATCGTTGATAAATCAGGTGCTTGGTATTCATATAACG
GTGAGCGTATGGGTCAAGGTAAAGAGAATGTAAAACAATTCCTACTTGAAAACCCTAAACTTGAAGATGAAATTGACCGT
AAATTACGTGAAAAACTCGGCATTTATGATGGTGATGTAGAAGAACCTGAACAAGAAGAAACGCAAACACTTTTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1WW13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.948

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

69.828

100

0.7
  recA Streptococcus pyogenes NZ131

70.213

94.813

0.666
  recA Streptococcus mutans UA159

66.189

100

0.666
  recA Streptococcus pneumoniae Rx1

65.805

100

0.66
  recA Streptococcus pneumoniae D39

65.805

100

0.66
  recA Streptococcus pneumoniae R6

65.805

100

0.66
  recA Streptococcus pneumoniae TIGR4

65.805

100

0.66
  recA Streptococcus mitis NCTC 12261

65.598

98.847

0.648
  recA Streptococcus mitis SK321

66.667

95.965

0.64
  recA Acinetobacter baumannii D1279779

62.644

100

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Acinetobacter baylyi ADP1

61.891

100

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.438

94.813

0.611
  recA Neisseria gonorrhoeae MS11

61.988

98.559

0.611
  recA Neisseria gonorrhoeae MS11

61.988

98.559

0.611
  recA Neisseria gonorrhoeae strain FA1090

61.988

98.559

0.611
  recA Helicobacter pylori 26695

62.805

94.524

0.594
  recA Vibrio cholerae strain A1552

63.19

93.948

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.19

93.948

0.594
  recA Helicobacter pylori strain NCTC11637

62.5

94.524

0.591
  recA Ralstonia pseudosolanacearum GMI1000

64.856

90.202

0.585
  recA Pseudomonas stutzeri DSM 10701

61.656

93.948

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.389

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.931

0.573
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568