Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | IHJ54_RS15665 | Genome accession | NZ_CP063241 |
| Coordinates | 3539519..3540592 (-) | Length | 357 a.a. |
| NCBI ID | WP_014916321.1 | Uniprot ID | - |
| Organism | Pectobacterium brasiliense strain ZLMLSHJ5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3541428..3551782 | 3539519..3540592 | flank | 836 |
Gene organization within MGE regions
Location: 3539519..3551782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHJ54_RS15665 (IHJ54_15650) | recA | 3539519..3540592 (-) | 1074 | WP_014916321.1 | recombinase RecA | Machinery gene |
| IHJ54_RS15670 (IHJ54_15655) | pncC | 3540700..3541194 (-) | 495 | WP_203449404.1 | nicotinamide-nucleotide amidase | - |
| IHJ54_RS15675 (IHJ54_15660) | - | 3541428..3541763 (-) | 336 | WP_203449406.1 | hypothetical protein | - |
| IHJ54_RS15680 (IHJ54_15665) | - | 3542245..3542733 (+) | 489 | WP_203449407.1 | SRPBCC family protein | - |
| IHJ54_RS15685 (IHJ54_15670) | - | 3542816..3543490 (+) | 675 | WP_039465283.1 | MarC family NAAT transporter | - |
| IHJ54_RS15690 (IHJ54_15675) | - | 3543671..3545269 (+) | 1599 | WP_203449409.1 | sensor domain-containing diguanylate cyclase | - |
| IHJ54_RS15695 (IHJ54_15680) | - | 3545509..3546729 (-) | 1221 | WP_203449411.1 | MFS transporter | - |
| IHJ54_RS15700 (IHJ54_15685) | - | 3546851..3547732 (-) | 882 | WP_039465293.1 | LysR family transcriptional regulator | - |
| IHJ54_RS15705 (IHJ54_15690) | grxB | 3547948..3548583 (+) | 636 | WP_203449412.1 | glutaredoxin 2 | - |
| IHJ54_RS15710 (IHJ54_15695) | - | 3548681..3549103 (-) | 423 | WP_203449414.1 | bacteriocin immunity protein | - |
| IHJ54_RS15715 (IHJ54_15700) | - | 3549210..3549359 (-) | 150 | WP_180775315.1 | hypothetical protein | - |
| IHJ54_RS15720 (IHJ54_15705) | pvcA | 3549438..3550397 (-) | 960 | WP_420907620.1 | L-tyrosine isonitrile synthase | - |
| IHJ54_RS15730 (IHJ54_15715) | - | 3551075..3551782 (-) | 708 | WP_203449417.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 38260.73 Da Isoelectric Point: 5.0716
>NTDB_id=494100 IHJ54_RS15665 WP_014916321.1 3539519..3540592(-) (recA) [Pectobacterium brasiliense strain ZLMLSHJ5]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAIAAEL
DKKLREMLLHKGNELTPATAGNSHDEDEFAGEGNEEF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAIAAEL
DKKLREMLLHKGNELTPATAGNSHDEDEFAGEGNEEF
Nucleotide
Download Length: 1074 bp
>NTDB_id=494100 IHJ54_RS15665 WP_014916321.1 3539519..3540592(-) (recA) [Pectobacterium brasiliense strain ZLMLSHJ5]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCTCTGGATATCGCCTTGGGCG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCCCAGCGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
GCTTGGTGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGTTGGAGATCTGTGATGCATTAA
CGCGCTCTGGCGCGGTTGACGTTATCATCGTTGACTCCGTTGCGGCACTGACGCCGAAGGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACTACCGGTGGTA
ACGCTCTGAAGTTTTATGCTTCTGTTCGCCTGGATATTCGTCGTACTGGTGCAATCAAGGAAGGCGAAGAAGTTGTCGGC
AGCGAAACCCGTGTGAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGCCAGGGTAAAGCAAATGCCTGTAATTTCCTGAAAGAGAACCCGGCGATTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTGACGCCAGCCACCGCTGGAAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAGTTTTAA
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCTCTGGATATCGCCTTGGGCG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCCCAGCGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
GCTTGGTGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGTTGGAGATCTGTGATGCATTAA
CGCGCTCTGGCGCGGTTGACGTTATCATCGTTGACTCCGTTGCGGCACTGACGCCGAAGGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACTACCGGTGGTA
ACGCTCTGAAGTTTTATGCTTCTGTTCGCCTGGATATTCGTCGTACTGGTGCAATCAAGGAAGGCGAAGAAGTTGTCGGC
AGCGAAACCCGTGTGAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGCCAGGGTAAAGCAAATGCCTGTAATTTCCTGAAAGAGAACCCGGCGATTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTGACGCCAGCCACCGCTGGAAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.