Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IM816_RS05380 Genome accession   NZ_CP063231
Coordinates   1261536..1262582 (+) Length   348 a.a.
NCBI ID   WP_072323038.1    Uniprot ID   A0A1K1QTE9
Organism   Luteibacter flocculans strain EIF3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256536..1267582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM816_RS05360 (IM816_05375) - 1257581..1258333 (-) 753 WP_250340064.1 TrbG/VirB9 family P-type conjugative transfer protein -
  IM816_RS05365 (IM816_05380) - 1258345..1259277 (-) 933 WP_072323035.1 type IV secretion system protein -
  IM816_RS05370 (IM816_05385) - 1259308..1259862 (-) 555 WP_250340065.1 hypothetical protein -
  IM816_RS05375 (IM816_05390) - 1260930..1261439 (+) 510 WP_250340066.1 CinA family protein -
  IM816_RS05380 (IM816_05395) recA 1261536..1262582 (+) 1047 WP_072323038.1 recombinase RecA Machinery gene
  IM816_RS05385 (IM816_05400) - 1262563..1263075 (+) 513 WP_072323039.1 regulatory protein RecX -
  IM816_RS05390 (IM816_05405) alaS 1263147..1265780 (+) 2634 WP_250340067.1 alanine--tRNA ligase -
  IM816_RS05395 (IM816_05410) csrA 1266083..1266280 (+) 198 WP_072323041.1 carbon storage regulator CsrA -
  IM816_RS05405 (IM816_05420) - 1266644..1267114 (+) 471 WP_250340068.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37428.61 Da        Isoelectric Point: 5.3467

>NTDB_id=493976 IM816_RS05380 WP_072323038.1 1261536..1262582(+) (recA) [Luteibacter flocculans strain EIF3]
MDDNKRKALASALGQIEKQFGKGAVMRLGDRVDDQIDTVSTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLQAIA
SCQRAGGTAAFVDAEHALDPSYAEKLGVNVADLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGEEVIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVRENLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPAITNEIDA
QLRDRLLVKPGSGTSKASDTEQDALEEV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=493976 IM816_RS05380 WP_072323038.1 1261536..1262582(+) (recA) [Luteibacter flocculans strain EIF3]
ATGGACGACAACAAGCGCAAGGCGCTGGCGAGTGCCCTAGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCGGTGATGCG
TCTGGGCGATCGCGTCGACGACCAGATCGACACCGTGTCGACCGGTTCGCTCGGCCTCGACATTGCCCTGGGCATTGGCG
GCCTGCCGCGCGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGCAAGACCACGCTCACGCTGCAGGCCATTGCG
TCCTGCCAGCGCGCTGGCGGCACCGCGGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGAGCTACGCCGAGAAGCTGGG
CGTCAACGTCGCCGACCTCCTGGTCAGCCAGCCGGACACCGGTGAACAGGCCCTCGAAATCGCCGACATGCTGGTGCGCT
CGGGCGCCGTCGACATGGTGGTGGTCGACTCGGTGGCGGCGCTTACGCCGAAGGCCGAAATCGAAGGTGAGATGGGCGAT
TCTCACGTGGGCCTGCATGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACGGCCAACATCAAGAAATCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAGACGACCACCGGCGGCAACGCGT
TGAAGTTCTACGCGTCCGTCCGCCTCGACATTCGTCGCATCGGTGCGGTGAAGAAGGGTGAGGAAGTCATCGGCTCCGAG
ACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCCGTCAGACCGAGTTCGAGATCCTCTACGGCGAGGGCAC
TTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTGCGGGAGAACCTGATCGACAAGTCCGGCGCCTGGTACAGCTACAAGG
GCGACCGCATCGGCCAGGGCAAGGAAAACGTCCGCCAGTTCCTCCGCGACAACCCGGCCATTACCAACGAGATCGACGCC
CAGCTGCGCGATCGCCTGCTGGTGAAGCCCGGTAGCGGCACGTCCAAGGCCAGCGACACCGAGCAGGATGCGCTCGAGGA
AGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1K1QTE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.385

98.563

0.753
  recA Acinetobacter baylyi ADP1

73.178

98.563

0.721
  recA Ralstonia pseudosolanacearum GMI1000

69.318

100

0.701
  recA Acinetobacter baumannii D1279779

70.435

99.138

0.698
  recA Neisseria gonorrhoeae MS11

74.383

93.103

0.693
  recA Neisseria gonorrhoeae MS11

74.383

93.103

0.693
  recA Neisseria gonorrhoeae strain FA1090

74.383

93.103

0.693
  recA Vibrio cholerae strain A1552

72.477

93.966

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.477

93.966

0.681
  recA Glaesserella parasuis strain SC1401

67.723

99.713

0.675
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.972

93.966

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.269

95.977

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

92.529

0.618
  recA Streptococcus mutans UA159

59.714

100

0.601
  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Streptococcus pneumoniae TIGR4

59.531

97.989

0.583
  recA Streptococcus pneumoniae Rx1

59.531

97.989

0.583
  recA Streptococcus pneumoniae D39

59.531

97.989

0.583
  recA Streptococcus pneumoniae R6

59.531

97.989

0.583
  recA Streptococcus mitis SK321

58.046

100

0.58
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

92.241

0.575
  recA Streptococcus mitis NCTC 12261

61.61

92.816

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.502

92.241

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.951

93.103

0.549