Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INR76_RS03710 Genome accession   NZ_CP063203
Coordinates   815957..816964 (-) Length   335 a.a.
NCBI ID   WP_223109317.1    Uniprot ID   -
Organism   Marixanthomonas sp. SCSIO 43207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 810957..821964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR76_RS03690 (INR76_03690) - 811352..812869 (-) 1518 WP_223109313.1 hypothetical protein -
  INR76_RS03695 (INR76_03695) - 812956..813696 (+) 741 WP_223109314.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  INR76_RS03700 (INR76_03700) - 813776..815275 (-) 1500 WP_223109315.1 outer membrane beta-barrel protein -
  INR76_RS03705 (INR76_03705) - 815308..815832 (-) 525 WP_223109316.1 RNA polymerase sigma factor -
  INR76_RS03710 (INR76_03710) recA 815957..816964 (-) 1008 WP_223109317.1 recombinase RecA Machinery gene
  INR76_RS03715 (INR76_03715) - 817197..818228 (+) 1032 WP_223109318.1 rhodanese-related sulfurtransferase -
  INR76_RS03720 (INR76_03720) - 818406..819584 (+) 1179 WP_223109319.1 regulatory iron-sulfur-containing complex subunit RicT -
  INR76_RS03725 (INR76_03725) - 819577..820059 (+) 483 WP_223109320.1 gliding motility lipoprotein GldH -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36494.98 Da        Isoelectric Point: 6.3053

>NTDB_id=493847 INR76_RS03710 WP_223109317.1 815957..816964(-) (recA) [Marixanthomonas sp. SCSIO 43207]
MSKEKEAKLKALKLTLDKMDKTYGKGTVMKMGDAAVQEVDVIPTGSLGLDVALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKKGGIAAFIDAEHAFDRYYAEKLGVDIENLIISQPDNGEQALEVTDNLIRSGAIDIIVVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGSISKTQCTVIFINQLREKIGVMFGNPETTTGGNALKFYCSVRLDIRRSTQIKDSNSDV
QGNKTRVKVVKNKVAPPFKTAEFDIMYGKGISKVGEVIDLGVDFEIIKKSGSWYSYDDTKLGQGRDAVKTLLLDNPELME
ELEVKIKDAINTLKE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=493847 INR76_RS03710 WP_223109317.1 815957..816964(-) (recA) [Marixanthomonas sp. SCSIO 43207]
ATGAGCAAAGAAAAAGAAGCAAAATTAAAAGCGTTAAAGCTTACACTTGATAAAATGGATAAAACCTACGGAAAAGGTAC
GGTTATGAAAATGGGCGATGCTGCCGTACAAGAAGTAGATGTAATACCAACAGGTTCGCTAGGGCTTGATGTAGCTTTGG
GTGTAGGAGGCTATCCTCGTGGAAGAGTTATTGAAATATATGGGCCGGAATCTTCGGGTAAAACCACTTTAACTTTGCAC
GCTATTGCCGAAGCACAAAAAAAAGGAGGTATCGCAGCCTTTATTGATGCAGAGCACGCTTTTGATCGCTATTATGCTGA
AAAATTAGGTGTAGATATTGAAAATTTAATTATTTCACAACCAGATAATGGAGAGCAAGCTTTGGAAGTTACCGATAACC
TAATTAGAAGTGGCGCTATCGATATTATTGTGGTTGATTCTGTAGCAGCATTAACACCGAAAAGTGAGATTGAAGGCGAA
ATGGGAGACAGCAAAATGGGACTCCACGCCCGGTTAATGTCACAAGCCTTGCGTAAATTAACAGGATCTATAAGCAAAAC
ACAGTGTACAGTTATTTTCATTAATCAATTGCGTGAGAAAATAGGTGTGATGTTTGGTAATCCCGAAACGACAACAGGTG
GTAATGCCTTAAAGTTCTACTGTTCTGTAAGGTTAGACATTCGCCGTTCTACACAAATAAAAGATTCAAACAGTGATGTA
CAAGGGAATAAAACCCGTGTTAAAGTGGTGAAAAACAAAGTAGCACCACCTTTTAAAACAGCCGAGTTTGACATTATGTA
CGGTAAAGGAATTTCAAAAGTAGGAGAGGTTATAGATTTAGGAGTAGATTTTGAAATTATCAAAAAAAGCGGTTCTTGGT
ACAGTTATGATGATACCAAGCTAGGTCAAGGACGTGACGCTGTTAAAACATTACTACTAGACAATCCAGAACTTATGGAA
GAACTGGAAGTTAAAATTAAAGACGCTATAAATACCTTAAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

75.684

98.209

0.743
  recA Neisseria gonorrhoeae strain FA1090

66.456

94.328

0.627
  recA Neisseria gonorrhoeae MS11

66.456

94.328

0.627
  recA Neisseria gonorrhoeae MS11

66.456

94.328

0.627
  recA Ralstonia pseudosolanacearum GMI1000

66.987

93.134

0.624
  recA Acinetobacter baumannii D1279779

63.914

97.612

0.624
  recA Acinetobacter baylyi ADP1

63.385

97.015

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

64.465

94.925

0.612
  recA Helicobacter pylori 26695

61.631

98.806

0.609
  recA Helicobacter pylori strain NCTC11637

61.631

98.806

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

96.716

0.603
  recA Glaesserella parasuis strain SC1401

61.774

97.612

0.603
  recA Pseudomonas stutzeri DSM 10701

62.733

96.119

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

97.015

0.594
  recA Vibrio cholerae strain A1552

61.231

97.015

0.594
  recA Streptococcus mitis NCTC 12261

61.682

95.821

0.591
  recA Streptococcus mitis SK321

61.682

95.821

0.591
  recA Streptococcus pneumoniae D39

60.748

95.821

0.582
  recA Streptococcus pneumoniae R6

60.748

95.821

0.582
  recA Streptococcus pneumoniae TIGR4

60.748

95.821

0.582
  recA Streptococcus pneumoniae Rx1

60.748

95.821

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60

97.015

0.582
  recA Streptococcus mutans UA159

59.877

96.716

0.579
  recA Streptococcus pyogenes NZ131

60.062

96.418

0.579
  recA Lactococcus lactis subsp. cremoris KW2

58.41

97.612

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.143

96.119

0.549