Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INR77_RS11460 Genome accession   NZ_CP063202
Coordinates   2421957..2423012 (-) Length   351 a.a.
NCBI ID   WP_223071176.1    Uniprot ID   -
Organism   Erythrobacter sp. SCSIO 43205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2416957..2428012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR77_RS11450 (INR77_11445) - 2417194..2418957 (+) 1764 WP_223071174.1 cation:proton antiporter -
  INR77_RS11455 (INR77_11450) alaS 2419002..2421677 (-) 2676 WP_223071175.1 alanine--tRNA ligase -
  INR77_RS11460 (INR77_11455) recA 2421957..2423012 (-) 1056 WP_223071176.1 recombinase RecA Machinery gene
  INR77_RS11465 (INR77_11460) - 2423174..2425693 (-) 2520 WP_223071177.1 PAS domain-containing sensor histidine kinase -
  INR77_RS11470 (INR77_11465) - 2425787..2426350 (-) 564 WP_223073542.1 DUF2062 domain-containing protein -
  INR77_RS11475 (INR77_11470) smpB 2426646..2427128 (-) 483 WP_223071178.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37829.35 Da        Isoelectric Point: 5.2010

>NTDB_id=493841 INR77_RS11460 WP_223071176.1 2421957..2423012(-) (recA) [Erythrobacter sp. SCSIO 43205]
MATQLKLVDKEKDVDRQKALDAALQQIDRAFGKGSAMKLGSKEAMQVESISTGSLGLDIALGIGGLPKGRVIEVYGPESS
GKTTLALHCIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEVIGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWYSYDSIRIGQGRENAKVYLK
ENPEVCDKLEAAIRGKTDEVAEEMMTGPDAE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=493841 INR77_RS11460 WP_223071176.1 2421957..2423012(-) (recA) [Erythrobacter sp. SCSIO 43205]
ATGGCTACCCAACTTAAGCTCGTAGACAAGGAAAAAGACGTGGACCGTCAAAAAGCGCTGGACGCTGCTCTCCAACAGAT
TGATCGCGCCTTTGGTAAAGGCTCGGCGATGAAGCTCGGCTCGAAAGAGGCGATGCAGGTGGAATCGATTTCAACCGGCT
CGCTCGGCCTTGACATTGCGCTTGGCATTGGCGGCCTTCCAAAGGGGCGCGTGATTGAGGTCTATGGCCCGGAAAGTTCG
GGCAAGACGACGCTCGCATTGCACTGCATCGCCGAGGCTCAGAAAGCGGGCGGTACGGCGGCTTTCGTTGATGCTGAGCA
CGCGCTTGACCCTGTCTATGCCAAGAAGCTGGGCGTTGATATTGACGAACTGATCGTCTCGCAGCCTGACACTGGCGAAC
AGGCTCTCGAAATCACTGACACTCTCGTTCGTTCGAATGCGATTGATGTTTTGGTGGTCGATTCGGTCGCAGCGCTTGTC
CCACGCGCCGAAATCGAAGGTGAAATGGGCGACAGCCACGTCGGCCTTCAAGCGCGGCTTATGTCCCAGTCGCTGCGCAA
GCTCACCGGTTCGATCAACCGTTCCAAGTGCATGGTGATCTTCATCAACCAATTGCGCATGAAAATCGGCGTGATGTACG
GCAACCCTGAGACGACGACGGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTTCGTCTCGACATCCGCCGCACCGGTCAG
ATCAAGGATCGCGATGAGGTGATCGGCAACTCGACCCGCGTCAAAGTGGTCAAAAACAAAGTTGCGCCGCCCTTCAAACA
GGTGGAATTCGACATCATGTATGGAGAGGGCATCTCCAAGATTGGCGAGATCCTTGACCTCGGCGTGAAAGCCGGCGTGG
TTGAAAAATCGGGCAGTTGGTATTCCTATGACAGCATTCGTATCGGCCAGGGCCGCGAGAACGCGAAGGTTTACCTGAAA
GAAAACCCGGAAGTTTGCGACAAGTTGGAAGCCGCCATTCGCGGTAAAACCGATGAGGTCGCCGAGGAGATGATGACTGG
CCCGGACGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.732

96.581

0.664
  recA Vibrio cholerae strain A1552

68.249

96.011

0.655
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.249

96.011

0.655
  recA Glaesserella parasuis strain SC1401

68.675

94.587

0.65
  recA Neisseria gonorrhoeae MS11

69.782

91.453

0.638
  recA Neisseria gonorrhoeae MS11

69.782

91.453

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.782

91.453

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

69.062

91.168

0.63
  recA Acinetobacter baylyi ADP1

68.323

91.738

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

93.447

0.624
  recA Acinetobacter baumannii D1279779

67.391

91.738

0.618
  recA Helicobacter pylori 26695

63.905

96.296

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.563

92.023

0.613
  recA Helicobacter pylori strain NCTC11637

63.609

96.296

0.613
  recA Ralstonia pseudosolanacearum GMI1000

69.481

87.749

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

62.647

96.866

0.607
  recA Streptococcus pneumoniae R6

59.943

100

0.601
  recA Streptococcus pneumoniae Rx1

59.943

100

0.601
  recA Streptococcus pneumoniae D39

59.943

100

0.601
  recA Streptococcus pneumoniae TIGR4

59.943

100

0.601
  recA Streptococcus mitis SK321

61.493

95.442

0.587
  recA Streptococcus mitis NCTC 12261

61.493

95.442

0.587
  recA Streptococcus pyogenes NZ131

61.963

92.877

0.575
  recA Lactococcus lactis subsp. cremoris KW2

58.772

97.436

0.573
  recA Streptococcus mutans UA159

61.42

92.308

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

92.593

0.567