Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INR78_RS05015 Genome accession   NZ_CP063201
Coordinates   1055554..1056558 (+) Length   334 a.a.
NCBI ID   WP_027879226.1    Uniprot ID   -
Organism   Mesoflavibacter sp. SCSIO 43206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050554..1061558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR78_RS04990 (INR78_04990) - 1050639..1051121 (-) 483 WP_223077729.1 gliding motility lipoprotein GldH -
  INR78_RS04995 (INR78_04995) - 1051108..1052367 (-) 1260 WP_223077730.1 regulatory iron-sulfur-containing complex subunit RicT -
  INR78_RS05000 (INR78_05000) - 1052518..1052748 (-) 231 WP_027879223.1 ferredoxin -
  INR78_RS05005 (INR78_05005) - 1052748..1053992 (-) 1245 WP_027879224.1 peptidase U32 family protein -
  INR78_RS05010 (INR78_05010) - 1053997..1055070 (-) 1074 WP_223077731.1 rhodanese-related sulfurtransferase -
  INR78_RS05015 (INR78_05015) recA 1055554..1056558 (+) 1005 WP_027879226.1 recombinase RecA Machinery gene
  INR78_RS05020 (INR78_05020) - 1056653..1057072 (+) 420 WP_106680632.1 hypothetical protein -
  INR78_RS05025 (INR78_05025) - 1057100..1057645 (+) 546 WP_223077732.1 RNA polymerase sigma factor -
  INR78_RS05030 (INR78_05030) - 1057646..1059121 (+) 1476 WP_223077733.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36068.35 Da        Isoelectric Point: 5.5619

>NTDB_id=493828 INR78_RS05015 WP_027879226.1 1055554..1056558(+) (recA) [Mesoflavibacter sp. SCSIO 43206]
MSKENEAKLKALQLTLDKLDKAYGKGTVMKMSDAAVVDVDAIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAEKLNVDIDNLIISQPDNGEQALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTASISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNGDV
MGNKTRVKVVKNKVAPPFKTAEFDIMYGEGVSKVGEILDVAVDKGIVKKSGSWFSYEDTKLGQGRDAVKLVIKDNPELFE
ELEGKIKTAIKEEQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=493828 INR78_RS05015 WP_027879226.1 1055554..1056558(+) (recA) [Mesoflavibacter sp. SCSIO 43206]
ATGAGCAAAGAAAACGAAGCAAAATTAAAAGCTTTACAACTAACACTAGACAAGCTAGATAAAGCCTACGGAAAAGGAAC
AGTAATGAAAATGAGTGATGCTGCTGTTGTAGATGTAGATGCTATACCTTCTGGATCTTTAGGTTTAGATATCGCTTTAG
GTGTTGGTGGTTACCCAAGAGGAAGAGTTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACCACATTAACCTTACAT
GCAATTGCTGAAGCACAAAAAGCAGGTGGTATTGCAGCATTTATTGATGCAGAACATGCTTTTGACCGTTTTTATGCTGA
AAAACTAAATGTAGATATTGATAATTTAATTATTTCTCAACCAGATAATGGTGAGCAAGCTTTAGAAATTGCAGATAATT
TAATACGTTCTGGAGCTATAGATATTGTTGTAGTCGATTCGGTTGCTGCATTAACTCCAAAAAGTGAAATTGAAGGAGAA
ATGGGTGATTCTAAAATGGGATTACACGCACGTTTAATGTCTCAAGCATTAAGAAAGTTAACTGCATCTATTAGCAAAAC
CAATTGTACCGTAATATTTATTAACCAATTACGTGAAAAAATTGGAGTTATGTTTGGTAACCCAGAAACTACTACTGGTG
GTAACGCTCTTAAATTTTATGCTTCTGTTAGATTAGATATTAGAAGATCTACACAAATTAAAGACTCTAACGGAGATGTT
ATGGGTAACAAAACAAGAGTTAAAGTGGTTAAAAACAAAGTAGCACCGCCATTTAAAACAGCAGAATTTGATATTATGTA
CGGTGAAGGTGTTAGTAAAGTTGGAGAAATTTTAGACGTAGCTGTAGATAAAGGCATTGTAAAGAAAAGCGGATCTTGGT
TTAGCTACGAAGACACTAAATTAGGACAAGGTAGAGATGCTGTAAAACTAGTTATAAAAGATAATCCAGAATTGTTTGAA
GAACTAGAAGGCAAAATAAAAACCGCAATAAAAGAAGAACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

78.012

99.401

0.775
  recA Acinetobacter baumannii D1279779

64.706

96.707

0.626
  recA Acinetobacter baylyi ADP1

64.688

95.808

0.62
  recA Glaesserella parasuis strain SC1401

62.691

97.904

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.353

94.91

0.611
  recA Ralstonia pseudosolanacearum GMI1000

66.019

92.515

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

97.904

0.608
  recA Helicobacter pylori strain NCTC11637

62.08

97.904

0.608
  recA Helicobacter pylori 26695

61.774

97.904

0.605
  recA Streptococcus mitis SK321

62.733

96.407

0.605
  recA Streptococcus mitis NCTC 12261

62.733

96.407

0.605
  recA Streptococcus pyogenes NZ131

61.61

96.707

0.596
  recA Neisseria gonorrhoeae MS11

63.987

93.114

0.596
  recA Neisseria gonorrhoeae MS11

63.987

93.114

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.987

93.114

0.596
  recA Streptococcus pneumoniae R6

61.801

96.407

0.596
  recA Streptococcus pneumoniae Rx1

61.801

96.407

0.596
  recA Streptococcus pneumoniae D39

61.801

96.407

0.596
  recA Streptococcus pneumoniae TIGR4

61.801

96.407

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

96.707

0.59
  recA Vibrio cholerae strain A1552

60.991

96.707

0.59
  recA Lactococcus lactis subsp. cremoris KW2

60.991

96.707

0.59
  recA Streptococcus mutans UA159

60.802

97.006

0.59
  recA Pseudomonas stutzeri DSM 10701

60.123

97.605

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

60.502

95.509

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.764

96.407

0.557