Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INR79_RS02265 Genome accession   NZ_CP063199
Coordinates   481612..482652 (+) Length   346 a.a.
NCBI ID   WP_004401294.1    Uniprot ID   A0AAV2VKL7
Organism   Vibrio sp. SCSIO 43132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 476612..487652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS02250 (INR79_02250) - 479160..479870 (+) 711 WP_223095862.1 phospholipase D-like domain-containing protein -
  INR79_RS02255 (INR79_02255) - 479883..480944 (+) 1062 WP_223095864.1 toxic anion resistance protein -
  INR79_RS02260 (INR79_02260) pncC 481016..481501 (+) 486 WP_022591235.1 nicotinamide-nucleotide amidase -
  INR79_RS02265 (INR79_02265) recA 481612..482652 (+) 1041 WP_004401294.1 recombinase RecA Machinery gene
  INR79_RS02270 (INR79_02270) recX 482745..483206 (+) 462 WP_004401293.1 recombination regulator RecX -
  INR79_RS02275 (INR79_02275) alaS 483464..486046 (+) 2583 WP_223095865.1 alanine--tRNA ligase -
  INR79_RS02280 (INR79_02280) - 486138..487334 (+) 1197 WP_004401291.1 aspartate kinase -
  INR79_RS02285 (INR79_02285) csrA 487421..487618 (+) 198 WP_004401290.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37430.89 Da        Isoelectric Point: 4.9706

>NTDB_id=493797 INR79_RS02265 WP_004401294.1 481612..482652(+) (recA) [Vibrio sp. SCSIO 43132]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPIYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANAGKFLRENSNIALEIDS
KLREMLLTTAQPEEPEQGEMPKEEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=493797 INR79_RS02265 WP_004401294.1 481612..482652(+) (recA) [Vibrio sp. SCSIO 43132]
ATGGACGATAACAAACAAAAGGCGTTAGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGACAACCGCGCGATGGATGTTGAAACCATCTCAACGGGTTCTCTGTCACTGGATATCGCTTTGGGTGCTGGTG
GTCTGCCGATGGGACGTATCGTAGAAATCTACGGTCCTGAGAGTTCGGGTAAAACCACGCTAACTCTTGAGCTTATCGCA
GCAGCACAACGTGAAGGTAAAACCTGTGCATTTATCGATGCAGAGCACGCGCTAGACCCTATCTACGCGAAGAAGCTTGG
TGTCGATATCGAAGCACTGCTTGTTTCTCAGCCTGATACAGGTGAGCAAGCGCTGGAAATCTGTGACGCGCTGGCACGTT
CTGGTGCTATCGACGTAATGGTAGTTGACTCCGTAGCAGCTCTAACACCAAAAGCGGAAATCGAAGGTGAAATGGGCGAC
AGCCACATGGGCTTGCAAGCACGTATGCTTTCTCAGGCTATGCGTAAGCTAACAGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACAGGTGGTAACGCAC
TGAAATTTTACGCATCTGTTCGTCTTGATATCCGCCGTACTGGTTCTATCAAAGATGGTGACGAAGTTGTTGGTAACGAA
ACCCGCATTAAAGTCGTGAAGAACAAGATTGCTGCACCGTTCAAGCAAGCTGAAACACAAATCATGTATGGTCAGGGTTT
CAACCGTGAAGGTGAGTTGATTGATCTGGGTGTGAAGCACAAGCTGGTTGAGAAAGCGGGTGCTTGGTACAGCTACAACG
GCGACAAGATTGGTCAGGGTAAAGCAAACGCAGGTAAATTCCTTCGTGAAAACTCGAACATTGCACTAGAAATCGATAGT
AAACTGCGTGAGATGCTACTCACGACGGCTCAGCCTGAAGAGCCAGAACAAGGCGAAATGCCAAAAGAAGAAGAGTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

87.252

100

0.89
  recA Vibrio cholerae O1 biovar El Tor strain E7946

87.252

100

0.89
  recA Acinetobacter baylyi ADP1

71.098

100

0.711
  recA Pseudomonas stutzeri DSM 10701

74.242

95.376

0.708
  recA Acinetobacter baumannii D1279779

74.164

95.087

0.705
  recA Neisseria gonorrhoeae MS11

67.622

100

0.682
  recA Neisseria gonorrhoeae MS11

67.622

100

0.682
  recA Neisseria gonorrhoeae strain FA1090

67.622

100

0.682
  recA Glaesserella parasuis strain SC1401

70.062

93.642

0.656
  recA Ralstonia pseudosolanacearum GMI1000

71.656

90.751

0.65
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

99.133

0.604
  recA Helicobacter pylori 26695

60.882

98.266

0.598
  recA Helicobacter pylori strain NCTC11637

60.588

98.266

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

92.775

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.665

0.578
  recA Streptococcus pneumoniae D39

61.61

93.353

0.575
  recA Streptococcus pneumoniae TIGR4

61.61

93.353

0.575
  recA Streptococcus pneumoniae R6

61.61

93.353

0.575
  recA Streptococcus pneumoniae Rx1

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.017

99.133

0.575
  recA Streptococcus mutans UA159

60.923

93.931

0.572
  recA Streptococcus pyogenes NZ131

60.923

93.931

0.572
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Streptococcus mitis SK321

60.991

93.353

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.502

92.197

0.558
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555