Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP91_RS01000 Genome accession   NZ_CP063123
Coordinates   194080..195135 (+) Length   351 a.a.
NCBI ID   WP_111388079.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 189080..200135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS00990 (INP91_00990) sxy/tfoX 192204..192872 (-) 669 WP_193452053.1 TfoX/Sxy family DNA transformation protein Regulator
  INP91_RS00995 (INP91_00995) - 193102..193944 (+) 843 WP_197545017.1 patatin-like phospholipase family protein -
  INP91_RS01000 (INP91_01000) recA 194080..195135 (+) 1056 WP_111388079.1 recombinase RecA Machinery gene
  INP91_RS01005 (INP91_01005) recX 195205..195657 (+) 453 WP_197545018.1 recombination regulator RecX -
  INP91_RS01010 (INP91_01010) crcB 195632..196027 (-) 396 WP_049365038.1 fluoride efflux transporter CrcB -
  INP91_RS01015 (INP91_01015) - 196028..196846 (-) 819 WP_197546015.1 Cof-type HAD-IIB family hydrolase -
  INP91_RS01020 (INP91_01020) tuf 197004..198188 (-) 1185 WP_005635637.1 elongation factor Tu -
  INP91_RS01045 (INP91_01045) coaA 198891..199826 (+) 936 WP_005695046.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37533.99 Da        Isoelectric Point: 4.8683

>NTDB_id=493160 INP91_RS01000 WP_111388079.1 194080..195135(+) (recA) [Haemophilus parainfluenzae strain M1C120_2]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLNENPAKSDEL
EAKLRAELVANPEQALMADIEQSTDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=493160 INP91_RS01000 WP_111388079.1 194080..195135(+) (recA) [Haemophilus parainfluenzae strain M1C120_2]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCAGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGACGTTGAATCTGTTTCAACGGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGGCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACCTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGTAAAACTTGCGCGTTTATCGATGCAGAGCATGCACTTGATCCTATTTATGCAGCAAA
ACTTGGCGTTGATGTGAAAGAACTTTTAGTCTCCCAGCCAGATAATGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGAGCTGTAGATGTCGTCATTGTGGACTCCGTTGCTGCACTTACCCCGAAAGCTGAAATTGAAGGCGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCGCTACGTAAATTAACCGGTCAAATCAAAAATGCAAA
TTGTCTCGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTCATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGTACTGGTTCAGTTAAAGATGGAGATGAAGTCATTGGT
AACGAAACTCGTGTTAAAGTAGTTAAAAACAAATTAGCTGCGCCTTTCCGCCAAGTGGATTTCCAAATTCTTTATGGAGA
AGGTATATCTAAAGCTGGCGAATTAATTGAACTCGGAGTTAAACACAAACTTGTTGAGAAATCTGGTGCATGGTATGCAT
ACAACGGTGAAAAGATTGGTCAAGGGAAAGCTAACGCAATGAAATGGTTAAACGAAAACCCTGCAAAATCAGACGAACTT
GAAGCGAAACTTCGTGCTGAATTAGTCGCTAACCCAGAGCAAGCATTAATGGCTGATATTGAACAATCTACCGATGACGC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

76.163

98.006

0.746
  recA Pseudomonas stutzeri DSM 10701

74.128

98.006

0.726
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.385

92.593

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541