Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A0Z60_RS07825 Genome accession   NZ_CP063087
Coordinates   1543093..1544124 (+) Length   343 a.a.
NCBI ID   WP_006802004.1    Uniprot ID   A0A2N3PHN2
Organism   Helicobacter winghamensis strain 2015D-0170     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1538093..1549124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0Z60_RS07800 (A0Z60_07800) - 1538720..1540813 (-) 2094 WP_197550159.1 ATP-dependent helicase -
  A0Z60_RS07805 (A0Z60_07805) - 1540842..1541675 (-) 834 WP_197550160.1 energy transducer TonB -
  A0Z60_RS07810 (A0Z60_07810) - 1541665..1542153 (-) 489 WP_006802001.1 hypothetical protein -
  A0Z60_RS07815 (A0Z60_07815) fliN 1542150..1542509 (-) 360 WP_006802002.1 flagellar motor switch protein FliN -
  A0Z60_RS07820 (A0Z60_07820) - 1542519..1542932 (-) 414 WP_006802003.1 hypothetical protein -
  A0Z60_RS07825 (A0Z60_07825) recA 1543093..1544124 (+) 1032 WP_006802004.1 recombinase RecA Machinery gene
  A0Z60_RS07830 (A0Z60_07830) eno 1544138..1545409 (+) 1272 WP_197550161.1 phosphopyruvate hydratase -
  A0Z60_RS07835 (A0Z60_07835) - 1545409..1545654 (+) 246 WP_006802006.1 septum formation initiator family protein -
  A0Z60_RS07840 (A0Z60_07840) - 1545651..1546472 (+) 822 WP_232086766.1 AMIN domain-containing protein -
  A0Z60_RS07845 (A0Z60_07845) - 1546459..1546950 (+) 492 WP_197550162.1 shikimate kinase -
  A0Z60_RS07850 (A0Z60_07850) waaF 1546947..1547990 (+) 1044 WP_197550163.1 lipopolysaccharide heptosyltransferase II -
  A0Z60_RS07855 (A0Z60_07855) - 1548023..1548886 (+) 864 WP_197550164.1 menaquinone biosynthesis family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36882.37 Da        Isoelectric Point: 5.0688

>NTDB_id=492833 A0Z60_RS07825 WP_006802004.1 1543093..1544124(+) (recA) [Helicobacter winghamensis strain 2015D-0170]
MALDENKQKAIELAIKQIDKAFGKGALIRLGDKPVEKIDAISTGSLGLDIALGIGGIPKGRIIEVYGPESSGKTTLALQI
VAECQKSGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFGEQALEILETLTRSGGVDLIVIDSVAALTPKSEIEGDM
GDQHVGLQARLMSQALRKVTGVIHKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIAALKQGEQNI
GNRVKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWLSYGDKKLGQGKENAKVFLKENPEIAQE
IEEKIKASISITDDLSNDGDTEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=492833 A0Z60_RS07825 WP_006802004.1 1543093..1544124(+) (recA) [Helicobacter winghamensis strain 2015D-0170]
ATGGCTTTAGATGAAAATAAACAAAAAGCGATAGAACTTGCCATTAAACAGATTGATAAAGCCTTTGGCAAGGGAGCTTT
AATTAGGCTTGGCGATAAGCCTGTAGAAAAGATTGATGCCATTAGCACAGGCTCTTTAGGGTTAGATATTGCACTTGGTA
TTGGAGGAATTCCAAAAGGCAGAATTATTGAAGTGTATGGACCAGAAAGCTCAGGGAAAACGACACTTGCCTTACAAATT
GTAGCAGAATGTCAAAAATCCGGTGGAATCTGTGCCTTTATTGATGCCGAACACGCTCTTGATGTAACTTATGCAAAGCG
TTTAGGTGTAGATGTAGAAAACTTACTTGTTTCTCAACCAGATTTTGGAGAGCAAGCCTTAGAGATTTTAGAAACACTCA
CAAGAAGCGGTGGTGTGGATTTAATCGTTATTGACTCCGTGGCAGCTCTCACTCCAAAAAGTGAGATTGAAGGCGATATG
GGTGACCAACATGTAGGACTTCAAGCGCGCTTAATGAGCCAAGCTCTCCGTAAAGTAACAGGTGTGATTCACAAAATGAA
CACCACAGTGATTTTTATCAACCAAATCCGTATGAAAATTGGTGTAATGGGCTATGGAAGCCCAGAAACAACAACAGGTG
GTAATGCTTTGAAGTTTTATGCAAGTGTGCGCATTGATGTGCGTAGAATTGCCGCTTTAAAACAAGGCGAACAAAACATT
GGAAATCGCGTTAAAGCAAAGGTTGTAAAAAACAAAGTTGCTCCACCCTTTAGGGGAGCAGAGTTTGATATTATGTTTGG
GGAAGGAATTAGCAAGGAAGGTGAGCTAATTGATTATGGCGTCAAACTTGATATTGTAGATAAAAGTGGAGCATGGCTAA
GTTATGGTGATAAAAAACTAGGACAAGGCAAGGAAAATGCAAAAGTATTCTTAAAAGAAAACCCAGAAATCGCACAAGAA
ATTGAAGAAAAAATAAAGGCTTCTATCTCAATCACTGATGATTTATCAAACGATGGTGATACTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N3PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

84.478

97.668

0.825
  recA Helicobacter pylori 26695

83.881

97.668

0.819
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.059

99.125

0.764
  recA Neisseria gonorrhoeae strain FA1090

65.217

100

0.656
  recA Neisseria gonorrhoeae MS11

65.217

100

0.656
  recA Neisseria gonorrhoeae MS11

65.217

100

0.656
  recA Acinetobacter baylyi ADP1

63.848

100

0.638
  recA Acinetobacter baumannii D1279779

65.758

96.21

0.633
  recA Pseudomonas stutzeri DSM 10701

65.758

96.21

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.918

0.624
  recA Ralstonia pseudosolanacearum GMI1000

67.302

91.837

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

96.21

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.198

94.461

0.606
  recA Vibrio cholerae strain A1552

64.198

94.461

0.606
  recA Glaesserella parasuis strain SC1401

62.883

95.044

0.598
  recA Lactococcus lactis subsp. cremoris KW2

59.94

96.793

0.58
  recA Streptococcus pneumoniae Rx1

60.121

96.501

0.58
  recA Streptococcus pneumoniae D39

60.121

96.501

0.58
  recA Streptococcus pneumoniae R6

60.121

96.501

0.58
  recA Streptococcus pneumoniae TIGR4

60.121

96.501

0.58
  recA Streptococcus mitis NCTC 12261

59.819

96.501

0.577
  recA Streptococcus mitis SK321

59.517

96.501

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

57.434

100

0.574
  recA Streptococcus pyogenes NZ131

59.509

95.044

0.566
  recA Streptococcus mutans UA159

57.784

97.376

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

95.044

0.563