Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMX23_RS06835 Genome accession   NZ_CP063071
Coordinates   1385050..1386096 (+) Length   348 a.a.
NCBI ID   WP_003747615.1    Uniprot ID   Q83TH4
Organism   Listeria seeligeri strain Sr73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380050..1391096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX23_RS06815 (IMX23_06815) ymfI 1381086..1381817 (+) 732 WP_003747611.1 elongation factor P 5-aminopentanone reductase -
  IMX23_RS06820 (IMX23_06820) - 1381867..1382802 (+) 936 WP_046328075.1 helix-turn-helix domain-containing protein -
  IMX23_RS06825 (IMX23_06825) pgsA 1382887..1383465 (+) 579 WP_003747613.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMX23_RS06830 (IMX23_06830) cinA 1383531..1384778 (+) 1248 WP_003747614.1 competence/damage-inducible protein A Machinery gene
  IMX23_RS06835 (IMX23_06835) recA 1385050..1386096 (+) 1047 WP_003747615.1 recombinase RecA Machinery gene
  IMX23_RS06840 (IMX23_06840) rny 1386399..1387961 (+) 1563 WP_012985597.1 ribonuclease Y -
  IMX23_RS06845 (IMX23_06845) - 1388079..1388576 (+) 498 WP_003747618.1 GNAT family N-acetyltransferase -
  IMX23_RS06850 (IMX23_06850) - 1388581..1389384 (+) 804 WP_003747619.1 TIGR00282 family metallophosphoesterase -
  IMX23_RS06855 (IMX23_06855) - 1389401..1389763 (+) 363 WP_075702994.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37936.98 Da        Isoelectric Point: 4.7521

>NTDB_id=492705 IMX23_RS06835 WP_003747615.1 1385050..1386096(+) (recA) [Listeria seeligeri strain Sr73]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGASKEPLEETEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=492705 IMX23_RS06835 WP_003747615.1 1385050..1386096(+) (recA) [Listeria seeligeri strain Sr73]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAGCACTCAGACCAAAATATATCTACTATTTCTAGTGGTTCATTAGCATTAGATATTGCTTTAGGAGTTGGCGGAT
ACCCAAGAGGCCGTATTATTGAAGTATACGGACCAGAAAGTTCTGGTAAGACAACTGTTGCACTACACGCTATTGCAGAA
GTACAAGCGCAAGGCGGTACAGCAGCATTTATTGATGCCGAACACGCATTAGATCCAGCATATGCGAAGAATCTTGGTGT
TAATATTGATGAGTTACTATTATCGCAACCAGACACAGGAGAACAAGCTCTAGAGATTGCAGAAGCATTAGTACGGAGTG
GCGCAGTCGATATGTTAGTTATTGACTCTGTTGCAGCTCTTGTGCCTCGCGCTGAAATCGAAGGCGAAATGGGAGATGCA
CATGTTGGTTTGCAAGCACGTTTAATGTCACAAGCATTACGTAAACTTTCCGGAGCCATCAATAAATCCAAAACTATCGC
GATCTTTATCAACCAAATTCGAGAAAAAGTTGGCGTTATGTTCGGAAACCCAGAAATCACACCAGGTGGTCGTGCACTGA
AATTCTATTCCACTGTTCGTTTAGAAGTAAGACGTGCAGAACAATTGAAACAAGGTACAGATGTAATGGGTAACAAAACG
AAAATCAAAGTAGTAAAAAACAAAGTAGCGCCACCGTTCCGTATCGCTGAAGTAGATATTATGTACGGAGAAGGTATTTC
ACGTGAAGGCGAGCTTGTTGATATGGCTGCTGAAGTTGATGTAATCAATAAGAGTGGTTCATGGTATTCTTATAAAGAAG
AGCGTATCGGTCAAGGCCGCGAAAATGCCAAGCAATACTTGAAAGAACACACGGATATTCGTGATGAAATTTCCAAACGT
GTTCGTGAAGAATACGAAATTGACGGAGCTAGCAAAGAGCCTCTTGAAGAAACAGAAGAAACTTTAAGTTTGCTAGACGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83TH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.451

94.253

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

77.299

100

0.773
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus mitis SK321

69.277

95.402

0.661
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae strain A1552

61.159

99.138

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.159

99.138

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.914

93.966

0.601
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Helicobacter pylori 26695

59.942

98.276

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

98.276

0.589
  recA Acinetobacter baylyi ADP1

58.96

99.425

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

94.54

0.586
  recA Acinetobacter baumannii D1279779

59.475

98.563

0.586
  recA Pseudomonas stutzeri DSM 10701

60.059

97.126

0.583
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.954

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56