Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMX20_RS03085 Genome accession   NZ_CP063065
Coordinates   643223..644314 (+) Length   363 a.a.
NCBI ID   WP_149256208.1    Uniprot ID   A0A7M1KTQ8
Organism   Aerococcus urinaeequi strain T43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 638223..649314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX20_RS03065 (IMX20_03070) - 638323..638700 (+) 378 WP_197558885.1 DUF1033 family protein -
  IMX20_RS03070 (IMX20_03075) - 638702..641125 (+) 2424 WP_197558886.1 DNA translocase FtsK -
  IMX20_RS03075 (IMX20_03080) pgsA 641215..641793 (+) 579 WP_069285264.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMX20_RS03080 (IMX20_03085) - 641907..643133 (+) 1227 WP_197558887.1 competence/damage-inducible protein A -
  IMX20_RS03085 (IMX20_03090) recA 643223..644314 (+) 1092 WP_149256208.1 recombinase RecA Machinery gene
  IMX20_RS03090 (IMX20_03095) rny 644543..646114 (+) 1572 WP_197558888.1 ribonuclease Y -
  IMX20_RS03095 (IMX20_03100) - 646490..646675 (+) 186 WP_141695276.1 restriction endonuclease subunit S -
  IMX20_RS03100 (IMX20_03105) - 646904..648103 (+) 1200 WP_197558889.1 ATP-binding protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39394.50 Da        Isoelectric Point: 4.7098

>NTDB_id=492664 IMX20_RS03085 WP_149256208.1 643223..644314(+) (recA) [Aerococcus urinaeequi strain T43]
MTMDKNDSNRQKALDDAMKKIERNFGKGSVMKMGERGDTRISTVPTGSLTLDISLGVGGYPRGRIIEVYGPESSGKTTVS
LHAIAEVQKRGGIAAFIDAENALDPEYAAKLGVNVDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIE
GEMGDSHIGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRGEQIKESGS
AIGNRTKIKIVKNKVAPPFKVAEVDIMYGEGISQEGELVDLAAELDIINKSGSWYSYGEDRIGQGRENAKQFLRENPEIR
ETIDGQVRQHFGFGQNGKLSEEELAALEANDQAQVELLEEETE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=492664 IMX20_RS03085 WP_149256208.1 643223..644314(+) (recA) [Aerococcus urinaeequi strain T43]
ATGACTATGGATAAAAACGATAGCAACCGTCAAAAAGCATTAGACGATGCAATGAAAAAAATTGAGCGTAACTTTGGTAA
AGGCTCAGTCATGAAAATGGGTGAACGCGGAGATACTAGAATCTCTACTGTTCCAACAGGTTCATTAACATTGGATATTT
CTTTAGGAGTTGGTGGCTACCCACGCGGTCGTATTATTGAAGTCTACGGACCAGAATCATCTGGTAAAACGACTGTTTCA
TTACATGCAATTGCGGAAGTACAAAAACGTGGTGGTATTGCAGCCTTTATCGATGCTGAGAATGCGCTAGATCCTGAATA
TGCGGCTAAACTAGGTGTAAACGTTGATGAGTTACTACTTTCTCAACCAGACACTGGTGAACAGGGTTTGGAGATTGCTG
ACGCGTTAGTATCTTCAGGTGCCATTGATATCATCGTTGTCGATTCAGTTGCAGCCTTAGTACCACGTGCCGAAATTGAA
GGTGAAATGGGTGACTCTCATATCGGTCTTCAAGCCCGGTTAATGTCTCAAGCATTACGTAAATTATCAGGCACCATCAA
CAAAACGAAAACAATCGCCATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTAATGTTTGGTAGTCCTGAAACAACAC
CAGGTGGTAGAGCCTTGAAATTCTACTCTACTGTGCGTTTAGAAGTACGTCGTGGTGAACAAATTAAAGAGAGCGGGAGC
GCAATCGGTAACCGTACTAAAATTAAGATTGTTAAAAACAAGGTAGCACCACCATTCAAAGTGGCAGAAGTTGACATCAT
GTATGGGGAAGGGATTTCTCAAGAGGGTGAACTAGTTGACTTAGCAGCTGAATTAGACATCATTAACAAGTCCGGTTCTT
GGTATTCATATGGTGAAGACCGTATCGGTCAAGGCCGTGAGAATGCAAAACAATTCTTACGAGAAAACCCAGAAATTCGT
GAAACCATTGATGGACAAGTTCGACAACACTTCGGTTTTGGCCAAAATGGTAAATTAAGCGAAGAAGAACTAGCGGCCTT
AGAAGCAAATGATCAAGCACAAGTGGAATTATTGGAAGAAGAAACAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KTQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

73.088

97.245

0.711
  recA Bacillus subtilis subsp. subtilis str. 168

77.879

90.909

0.708
  recA Streptococcus mitis NCTC 12261

66.017

98.898

0.653
  recA Streptococcus mitis SK321

65.738

98.898

0.65
  recA Streptococcus pneumoniae D39

67.941

93.664

0.636
  recA Streptococcus pneumoniae Rx1

67.941

93.664

0.636
  recA Streptococcus pneumoniae R6

67.941

93.664

0.636
  recA Streptococcus pneumoniae TIGR4

67.941

93.664

0.636
  recA Streptococcus mutans UA159

70.122

90.358

0.634
  recA Streptococcus pyogenes NZ131

70.336

90.083

0.634
  recA Lactococcus lactis subsp. cremoris KW2

66.967

91.736

0.614
  recA Acinetobacter baumannii D1279779

61.243

93.113

0.57
  recA Neisseria gonorrhoeae MS11

64.174

88.43

0.567
  recA Neisseria gonorrhoeae MS11

64.174

88.43

0.567
  recA Neisseria gonorrhoeae strain FA1090

64.174

88.43

0.567
  recA Ralstonia pseudosolanacearum GMI1000

63.467

88.981

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.714

92.562

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.706

93.664

0.559
  recA Vibrio cholerae strain A1552

59.706

93.664

0.559
  recA Glaesserella parasuis strain SC1401

57.67

96.97

0.559
  recA Acinetobacter baylyi ADP1

61.846

89.532

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.069

87.879

0.545
  recA Pseudomonas stutzeri DSM 10701

60

89.532

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.451

90.358

0.537
  recA Helicobacter pylori 26695

58.104

90.083

0.523
  recA Helicobacter pylori strain NCTC11637

58.104

90.083

0.523