Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMZ92_RS01295 Genome accession   NZ_CP063064
Coordinates   263958..265022 (+) Length   354 a.a.
NCBI ID   WP_080122538.1    Uniprot ID   A0AAQ0ELR6
Organism   Chlamydia suis strain S45 RIF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258958..270022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ92_RS01270 (IMZ92_01265) - 259577..259873 (-) 297 WP_080122533.1 YggT family protein -
  IMZ92_RS01275 (IMZ92_01270) - 259977..261356 (+) 1380 WP_219664493.1 hypothetical protein -
  IMZ92_RS01280 (IMZ92_01275) - 261357..261935 (+) 579 WP_080124931.1 hypothetical protein -
  IMZ92_RS01285 (IMZ92_01280) - 261926..263203 (+) 1278 WP_080124932.1 toxin-antitoxin system YwqK family antitoxin -
  IMZ92_RS01290 (IMZ92_01285) - 263206..263742 (+) 537 WP_080125257.1 5-formyltetrahydrofolate cyclo-ligase -
  IMZ92_RS01295 (IMZ92_01290) recA 263958..265022 (+) 1065 WP_080122538.1 recombinase RecA Machinery gene
  IMZ92_RS01300 (IMZ92_01295) - 265290..267116 (+) 1827 WP_080122539.1 DUF1347 family protein -
  IMZ92_RS01305 (IMZ92_01300) recD 267117..268610 (+) 1494 WP_080132482.1 exodeoxyribonuclease V subunit alpha -
  IMZ92_RS01310 (IMZ92_01305) - 268672..268851 (+) 180 WP_035407357.1 hypothetical protein -
  IMZ92_RS01315 (IMZ92_01310) lptB 268954..269673 (-) 720 WP_080122541.1 LPS export ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38172.70 Da        Isoelectric Point: 7.2683

>NTDB_id=492650 IMZ92_RS01295 WP_080122538.1 263958..265022(+) (recA) [Chlamydia suis strain S45 RIF]
MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIIEIFGPESSGKTTLATHI
VANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEI
GDVYVGLQARMMSQALRKLTATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGSIKGGDNFDI
GNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQERKLGQGREAVREELKRNKELFQE
LERRIYESVQTTSSQAVASACLEQESREVAEAAK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=492650 IMZ92_RS01295 WP_080122538.1 263958..265022(+) (recA) [Chlamydia suis strain S45 RIF]
ATGAGCGTTCCCGACCGGAAAAGGGCTTTGGAAGCTGCCATTGCCTATATTGAAAAGCAATTTGGCGCAGGATCTATTAT
GAGCTTAGGAAAACATTCTTCTGCTCATGAGATATCAACTATTAAAACAGGCGCATTGTCGTTGGATTTGGCCTTGGGAA
TAGGGGGAGTTCCTAAAGGCAGAATTATAGAGATTTTTGGGCCAGAGTCTTCTGGGAAAACGACTCTAGCAACGCATATA
GTGGCTAATGCTCAAAAAATGGGAGGTGTGGCAGCTTATATCGACGCTGAGCATGCTCTGGATCCCAATTATGCTGCGCT
AATTGGGGCAAATATTAATGATTTAATGATTTCTCAGCCGGATTGTGGCGAGGATGCTTTGAGTATTGCGGAGCTTTTAG
CGCGATCGGGAGCGGTAGATGTGATCGTAATCGATTCTGTGGCAGCATTGGTTCCTAAAAGTGAATTGGAAGGAGAAATT
GGAGACGTATATGTAGGGTTACAAGCTCGTATGATGTCTCAGGCTTTACGAAAACTCACTGCGACTTTGGCTCGGACGAA
CACTTGTGCCATTTTTATCAACCAAATTCGAGAAAAAATCGGAGTGAGCTTCGGGAACCCAGAGACCACAACAGGGGGAC
GCGCACTGAAATTTTACTCGTCAATTCGTATGGATATTCGTCGTATCGGTTCCATAAAAGGAGGCGATAACTTTGACATA
GGAAATCGAATTAAAGTGAAAGTTGCGAAAAATAAATTAGCGCCTCCTTTTAGAACCGCTGAATTCGATATTTTGTTCAA
TGAAGGAATTTCTTCTGCAGGATGTATTATTGATCTTGCTGTAGAGAAAAACATTATTGATAAGAAAGGCTCTTGGTTCA
ATTATCAAGAGCGTAAATTAGGACAAGGCCGAGAGGCTGTTCGAGAGGAGCTTAAAAGGAATAAGGAGTTATTCCAAGAG
CTCGAGCGTCGTATTTATGAATCTGTGCAAACGACCTCGTCACAAGCTGTAGCATCTGCTTGTTTAGAGCAAGAATCCCG
AGAAGTAGCAGAAGCCGCAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

60.991

91.243

0.556
  recA Ralstonia pseudosolanacearum GMI1000

60.494

91.525

0.554
  recA Glaesserella parasuis strain SC1401

56.196

98.023

0.551
  recA Helicobacter pylori 26695

58.896

92.09

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.182

93.22

0.542
  recA Pseudomonas stutzeri DSM 10701

56.637

95.763

0.542
  recA Helicobacter pylori strain NCTC11637

58.589

92.09

0.54
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.589

92.09

0.54
  recA Acinetobacter baylyi ADP1

54.598

98.305

0.537
  recA Neisseria gonorrhoeae MS11

59.19

90.678

0.537
  recA Neisseria gonorrhoeae MS11

59.19

90.678

0.537
  recA Neisseria gonorrhoeae strain FA1090

59.19

90.678

0.537
  recA Lactococcus lactis subsp. cremoris KW2

58.282

92.09

0.537
  recA Streptococcus mutans UA159

53.258

99.718

0.531
  recA Acinetobacter baumannii D1279779

54.839

96.328

0.528
  recA Latilactobacillus sakei subsp. sakei 23K

57.231

91.808

0.525
  recA Streptococcus pneumoniae R6

53.602

98.023

0.525
  recA Streptococcus pneumoniae TIGR4

53.602

98.023

0.525
  recA Streptococcus pneumoniae Rx1

53.602

98.023

0.525
  recA Streptococcus pneumoniae D39

53.602

98.023

0.525
  recA Streptococcus pyogenes NZ131

57.099

91.525

0.523
  recA Streptococcus mitis NCTC 12261

57.099

91.525

0.523
  recA Streptococcus mitis SK321

57.099

91.525

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.966

91.243

0.52
  recA Vibrio cholerae strain A1552

56.966

91.243

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.294

92.09

0.5