Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP83_RS01615 Genome accession   NZ_CP063061
Coordinates   407346..408353 (+) Length   335 a.a.
NCBI ID   WP_146273312.1    Uniprot ID   A0A563TXC0
Organism   Mucilaginibacter sp. 21P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 402346..413353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP83_RS01600 (INP83_01595) - 405157..405741 (+) 585 WP_146273309.1 RNA polymerase sigma factor -
  INP83_RS01605 (INP83_01600) - 405967..406164 (+) 198 WP_219126054.1 hypothetical protein -
  INP83_RS01610 (INP83_01605) nth 406381..407142 (+) 762 WP_219126055.1 endonuclease III -
  INP83_RS01615 (INP83_01610) recA 407346..408353 (+) 1008 WP_146273312.1 recombinase RecA Machinery gene
  INP83_RS01620 (INP83_01615) - 408539..409396 (-) 858 WP_146273313.1 transglutaminase-like domain-containing protein -
  INP83_RS01625 (INP83_01620) - 409441..410226 (+) 786 WP_146273314.1 O-methyltransferase -
  INP83_RS01630 (INP83_01625) - 410223..410777 (-) 555 WP_219126056.1 dihydrofolate reductase family protein -
  INP83_RS01635 (INP83_01630) - 410806..411372 (-) 567 WP_219126057.1 dihydrofolate reductase family protein -
  INP83_RS01640 (INP83_01635) - 411520..412500 (+) 981 WP_146273317.1 GlxA family transcriptional regulator -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36149.57 Da        Isoelectric Point: 5.3295

>NTDB_id=492637 INP83_RS01615 WP_146273312.1 407346..408353(+) (recA) [Mucilaginibacter sp. 21P]
MSNTDKLKALQLTLDKLEKSYGKGTIMKLGDSVIEQTETISTGSLGLDIALGVNGLPKGRVIEIYGPESSGKTTLAIHAI
AESQKKGGIAAFIDAEHAFDRFYAKKLGVDVENLLISQPDNGEQALEIADNLIRSGAIDILVIDSVAALVPKAEIEGEMG
DSKMGLHARLMSQALRKLTGTISKTGCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDVRRISQIKDTDEVSGN
RVKVKIVKNKVAPPFRVAEFDIMFGEGISKAGEIIDLGVEYNIIKKAGSWFSYGETRLGQGRDAVKQLIMDNPELADELE
AKIKATVTGDSLVEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=492637 INP83_RS01615 WP_146273312.1 407346..408353(+) (recA) [Mucilaginibacter sp. 21P]
ATGAGCAACACAGATAAATTGAAAGCATTACAGCTTACGCTTGATAAGCTGGAAAAATCATATGGTAAAGGTACCATTAT
GAAACTGGGCGATTCGGTTATTGAACAAACCGAAACCATTTCTACCGGTTCATTGGGCCTTGATATTGCCTTAGGTGTTA
ATGGTTTGCCAAAAGGCAGGGTCATCGAGATCTATGGCCCGGAATCATCTGGTAAAACCACGTTGGCTATCCATGCCATT
GCAGAGTCGCAAAAGAAAGGCGGCATTGCTGCTTTTATCGATGCGGAGCACGCTTTCGACCGTTTCTACGCTAAAAAGTT
AGGTGTTGATGTAGAGAACCTATTGATCTCTCAGCCGGATAACGGGGAGCAGGCTTTGGAAATTGCCGACAACCTGATCC
GTTCAGGAGCTATTGATATCCTGGTTATCGACTCTGTTGCTGCCCTTGTACCAAAGGCAGAGATAGAAGGCGAAATGGGC
GATTCTAAAATGGGTTTGCACGCACGTTTAATGTCGCAGGCATTGCGTAAGCTTACCGGTACCATCAGCAAAACCGGATG
TTGCTGTATCTTTATTAACCAGTTGCGCGATAAGATCGGTGTAATGTTTGGTAACCCTGAAACAACTACCGGTGGTAATG
CACTAAAATTCTACGCTTCGGTACGTTTGGATGTTCGCCGTATATCGCAAATTAAAGATACCGACGAAGTGTCTGGTAAC
CGCGTTAAGGTGAAGATCGTTAAAAATAAAGTAGCACCTCCATTCCGTGTCGCAGAGTTCGATATCATGTTTGGCGAGGG
TATCTCTAAAGCCGGCGAGATCATTGACCTGGGTGTTGAATACAACATCATCAAGAAAGCAGGCTCATGGTTCAGCTATG
GCGAAACCCGCCTGGGCCAGGGCCGCGATGCAGTTAAACAGCTGATAATGGACAACCCCGAACTTGCGGACGAACTTGAA
GCAAAAATAAAAGCTACCGTAACCGGTGATTCATTGGTTGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A563TXC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.866

97.91

0.713
  recA Ralstonia pseudosolanacearum GMI1000

69.156

91.94

0.636
  recA Neisseria gonorrhoeae strain FA1090

66.149

96.119

0.636
  recA Neisseria gonorrhoeae MS11

66.149

96.119

0.636
  recA Neisseria gonorrhoeae MS11

66.149

96.119

0.636
  recA Acinetobacter baylyi ADP1

64.375

95.522

0.615
  recA Helicobacter pylori 26695

63.19

97.313

0.615
  recA Helicobacter pylori strain NCTC11637

63.19

97.313

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

95.821

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

97.313

0.612
  recA Acinetobacter baumannii D1279779

64.062

95.522

0.612
  recA Glaesserella parasuis strain SC1401

62.462

97.015

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

97.015

0.594
  recA Pseudomonas stutzeri DSM 10701

60.681

96.418

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.938

95.522

0.582
  recA Vibrio cholerae strain A1552

60.938

95.522

0.582
  recA Streptococcus mitis NCTC 12261

59.692

97.015

0.579
  recA Streptococcus mitis SK321

59.385

97.015

0.576
  recA Streptococcus pyogenes NZ131

59.568

96.716

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.443

96.418

0.573
  recA Streptococcus pneumoniae R6

58.589

97.313

0.57
  recA Streptococcus pneumoniae Rx1

58.589

97.313

0.57
  recA Streptococcus pneumoniae D39

58.589

97.313

0.57
  recA Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  recA Streptococcus mutans UA159

56.716

100

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

96.716

0.555