Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IL982_RS01455 Genome accession   NZ_CP063049
Coordinates   252041..253108 (+) Length   355 a.a.
NCBI ID   WP_232092154.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Dl-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 247041..258108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL982_RS01440 (IL982_01440) rpoS 247460..248461 (+) 1002 WP_086367468.1 RNA polymerase sigma factor RpoS -
  IL982_RS01445 (IL982_01445) mutS 248611..251181 (-) 2571 WP_414477575.1 DNA mismatch repair protein MutS -
  IL982_RS01450 (IL982_01450) pncC 251427..251915 (+) 489 WP_086367467.1 nicotinamide-nucleotide amidase -
  IL982_RS01455 (IL982_01455) recA 252041..253108 (+) 1068 WP_232092154.1 recombinase RecA Machinery gene
  IL982_RS01460 (IL982_01460) kch 253297..254529 (+) 1233 WP_099050453.1 voltage-gated potassium channel protein -
  IL982_RS01465 (IL982_01465) alaS 254806..257427 (+) 2622 WP_005297824.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38256.79 Da        Isoelectric Point: 4.8894

>NTDB_id=492554 IL982_RS01455 WP_232092154.1 252041..253108(+) (recA) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MESRMDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTL
ETIASAQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEG
EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEV
VGNETRIKVVKNKIAAPFKQAETQILYGQGFNRVGELIDLGVKQKLIEKAGAWYSYKGDKIGQGKANAGKYLTENPAIAD
EIEKQIRELLLTPPQEETTEDASLDAIEAGEDKAF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=492554 IL982_RS01455 WP_232092154.1 252041..253108(+) (recA) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGGAGAGTCGAATGGACGAGAATAAACAAAAGGCTCTTGCCGCTGCGTTAGGCCAAATTGAGAAGCAGTTCGGTAAAGG
CTCTATCATGAAGCTTGGCGATAACCGTACTATGGATATCGAAACCGTATCAACTGGTTCGTTAGCTCTTGATATCGCAT
TGGGTGCTGGTGGTTTACCTATGGGCCGTATCGTTGAGATTTTTGGTCCTGAATCATCAGGTAAAACAACATTAACATTA
GAAACCATCGCATCAGCTCAGCGCCAAGGTAAAACTTGTGCCTTTATTGATGCTGAGCACGCACTGGATCCTATTTATGC
TAAGAAATTGGGCGTAGATATTGACCAATTATTGGTTTCACAGCCAGATACTGGTGAGCAAGCGTTAGAGATTTGTGATG
CATTAGCACGCTCTGGTGCTGTTGACCTTATCGTTGTCGACTCTGTTGCGGCATTAACACCAAAAGCGGAAATTGAAGGC
GAAATGGGTGACTCACACATGGGTCTGCAAGCTCGTATGCTGTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAGCA
GTCTAACTGTATGTGTATTTTCATCAATCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAACCCAGAAACAACAACTG
GTGGTAATGCACTTAAGTTTTACGCTTCTGTTCGTCTTGATATCCGTCGTACGGGTTCAATCAAAGATGGCGAAGAAGTT
GTGGGTAACGAAACTCGTATTAAAGTGGTGAAGAACAAAATCGCTGCACCATTTAAGCAAGCTGAAACGCAAATTCTGTA
CGGACAAGGCTTCAACCGTGTTGGTGAGCTTATCGACCTTGGTGTTAAGCAAAAGCTAATTGAAAAAGCTGGTGCTTGGT
ATAGTTATAAAGGCGATAAGATTGGTCAAGGTAAAGCGAATGCAGGTAAATACTTAACCGAGAATCCTGCTATTGCCGAT
GAGATCGAAAAACAAATTCGTGAGTTGTTATTAACACCACCGCAAGAAGAAACAACTGAAGATGCTTCTCTTGATGCTAT
CGAAGCTGGTGAAGATAAAGCATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.666

92.676

0.831
  recA Vibrio cholerae strain A1552

89.666

92.676

0.831
  recA Pseudomonas stutzeri DSM 10701

75

94.648

0.71
  recA Acinetobacter baumannii D1279779

75.305

92.394

0.696
  recA Acinetobacter baylyi ADP1

73.952

94.085

0.696
  recA Glaesserella parasuis strain SC1401

71.429

92.676

0.662
  recA Neisseria gonorrhoeae MS11

70.245

91.831

0.645
  recA Neisseria gonorrhoeae MS11

70.245

91.831

0.645
  recA Neisseria gonorrhoeae strain FA1090

70.245

91.831

0.645
  recA Ralstonia pseudosolanacearum GMI1000

69.207

92.394

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

91.268

0.589
  recA Streptococcus pneumoniae Rx1

61.607

94.648

0.583
  recA Streptococcus pneumoniae TIGR4

61.607

94.648

0.583
  recA Streptococcus pneumoniae R6

61.607

94.648

0.583
  recA Streptococcus pneumoniae D39

61.607

94.648

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

90.423

0.58
  recA Streptococcus mitis NCTC 12261

62.539

90.986

0.569
  recA Helicobacter pylori 26695

62.154

91.549

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

58.892

96.62

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.239

0.569
  recA Helicobacter pylori strain NCTC11637

61.846

91.549

0.566
  recA Streptococcus mitis SK321

61.92

90.986

0.563
  recA Streptococcus mutans UA159

60.366

92.394

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

91.831

0.552
  recA Streptococcus pyogenes NZ131

59.756

92.394

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.133

90.986

0.538