Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMZ31_RS08895 Genome accession   NZ_CP062974
Coordinates   1770194..1771231 (+) Length   345 a.a.
NCBI ID   WP_207530145.1    Uniprot ID   -
Organism   Pontibacillus sp. ALD_SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765194..1776231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ31_RS08870 (IMZ31_08875) - 1765556..1765813 (+) 258 WP_207530141.1 DUF3243 domain-containing protein -
  IMZ31_RS08875 (IMZ31_08880) - 1766316..1767107 (+) 792 WP_036778849.1 DUF3388 domain-containing protein -
  IMZ31_RS08880 (IMZ31_08885) - 1767126..1768112 (+) 987 WP_207530142.1 RodZ family helix-turn-helix domain-containing protein -
  IMZ31_RS08885 (IMZ31_08890) pgsA 1768198..1768776 (+) 579 WP_207530143.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMZ31_RS08890 (IMZ31_08895) - 1768778..1770028 (+) 1251 WP_207530144.1 competence/damage-inducible protein A -
  IMZ31_RS08895 (IMZ31_08900) recA 1770194..1771231 (+) 1038 WP_207530145.1 recombinase RecA Machinery gene
  IMZ31_RS08900 (IMZ31_08905) rny 1771554..1773116 (+) 1563 WP_036778863.1 ribonuclease Y -
  IMZ31_RS08905 (IMZ31_08910) - 1773249..1774046 (+) 798 WP_207530146.1 TIGR00282 family metallophosphoesterase -
  IMZ31_RS08910 (IMZ31_08915) spoVS 1774155..1774415 (+) 261 WP_036778868.1 stage V sporulation protein SpoVS -
  IMZ31_RS08915 (IMZ31_08920) - 1774644..1775570 (+) 927 WP_207530147.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37630.64 Da        Isoelectric Point: 5.0793

>NTDB_id=492140 IMZ31_RS08895 WP_207530145.1 1770194..1771231(+) (recA) [Pontibacillus sp. ALD_SL1]
MSDRKQALDMALRQIEKQFGKGSIMKLGEQAEMKVNTVPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIAE
AQRQGGQAAFIDAEHALDPVYARALGVDIENLLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLGGAINKSKTTAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRQAEVDIMYGEGISKEGELIDIGTDLDIITKSGSWYSYNDERMGQGRENAKGYLKENPDRYDEINTK
IRQHYDMYDDPEGSKENGNQDTLDV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=492140 IMZ31_RS08895 WP_207530145.1 1770194..1771231(+) (recA) [Pontibacillus sp. ALD_SL1]
GTGAGCGATCGTAAACAAGCGTTAGATATGGCTTTACGTCAAATAGAAAAGCAATTCGGTAAAGGTTCAATCATGAAATT
GGGCGAGCAAGCCGAAATGAAGGTAAATACAGTGCCAAGTGGTTCTTTAGCTCTTGATGTAGCTCTAGGTGTAGGTGGTT
ACCCTCGCGGTCGTATCGTAGAGGTTTATGGACCAGAGTCTTCTGGTAAAACAACGGTTGCGCTTCACGCTATTGCAGAA
GCACAACGTCAAGGTGGTCAAGCGGCATTTATTGACGCTGAGCACGCTCTCGATCCGGTTTATGCCCGTGCATTAGGTGT
TGATATTGAGAATCTGTTACTATCTCAACCTGATACAGGAGAACAAGCACTTGAAATCGCAGAAGCTCTTGTACGAAGCG
GCGCGATTGATATAATCGTCATTGACTCTGTGGCAGCATTAGTGCCTAAAGCTGAGATTGAAGGGGAAATGGGAGACTCT
CACGTTGGTCTTCAAGCCCGACTTATGTCTCAAGCGCTTCGTAAACTTGGCGGTGCTATTAATAAATCGAAAACAACAGC
TATGTTTATCAACCAAATACGTGAAAAAGTTGGAGTTATGTTCGGTAATCCTGAAACAACTCCTGGTGGACGCGCGCTAA
AGTTCTATTCTTCTGTCCGTTTAGAAGTGCGCCGTGCTGAAACGCTTAAGCAAGGAAATGAAATGGTTGGTAATAAAACA
AAAATTAAAGTCGTTAAGAATAAGGTAGCTCCTCCATTTAGGCAAGCAGAAGTTGATATCATGTATGGTGAAGGGATCTC
TAAAGAAGGTGAGCTCATCGACATTGGTACTGACCTCGATATTATAACGAAGAGTGGGTCTTGGTATTCCTATAACGACG
AACGTATGGGGCAAGGCCGTGAAAATGCAAAAGGATATCTTAAAGAAAATCCTGACCGCTATGATGAAATTAATACGAAG
ATTCGTCAGCATTATGACATGTATGATGATCCTGAAGGTTCCAAAGAAAATGGGAATCAGGATACTTTAGATGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

94.783

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

74.242

95.652

0.71
  recA Streptococcus pneumoniae D39

68.235

98.551

0.672
  recA Streptococcus pneumoniae R6

68.235

98.551

0.672
  recA Streptococcus pneumoniae Rx1

68.235

98.551

0.672
  recA Streptococcus pneumoniae TIGR4

68.235

98.551

0.672
  recA Streptococcus mitis NCTC 12261

68.955

97.101

0.67
  recA Streptococcus mutans UA159

65.527

100

0.667
  recA Streptococcus mitis SK321

67.055

99.42

0.667
  recA Lactococcus lactis subsp. cremoris KW2

67.761

97.101

0.658
  recA Streptococcus pyogenes NZ131

68.502

94.783

0.649
  recA Neisseria gonorrhoeae strain FA1090

68.847

93.043

0.641
  recA Neisseria gonorrhoeae MS11

68.847

93.043

0.641
  recA Neisseria gonorrhoeae MS11

68.847

93.043

0.641
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.636

95.652

0.609
  recA Vibrio cholerae strain A1552

63.636

95.652

0.609
  recA Ralstonia pseudosolanacearum GMI1000

67.097

89.855

0.603
  recA Acinetobacter baylyi ADP1

63.385

94.203

0.597
  recA Helicobacter pylori strain NCTC11637

63.665

93.333

0.594
  recA Helicobacter pylori 26695

63.665

93.333

0.594
  recA Glaesserella parasuis strain SC1401

64.263

92.464

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

93.043

0.591
  recA Acinetobacter baumannii D1279779

62.422

93.333

0.583
  recA Pseudomonas stutzeri DSM 10701

62.5

92.754

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.754

0.58