Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMZ30_RS05625 Genome accession   NZ_CP062973
Coordinates   1181348..1182370 (+) Length   340 a.a.
NCBI ID   WP_207039572.1    Uniprot ID   -
Organism   Psychroflexus sp. ALD_RP9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1176348..1187370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ30_RS05600 (IMZ30_05595) - 1176586..1177560 (+) 975 WP_207039567.1 hypothetical protein -
  IMZ30_RS05605 (IMZ30_05600) rfbB 1177553..1178566 (+) 1014 WP_207039568.1 dTDP-glucose 4,6-dehydratase -
  IMZ30_RS05610 (IMZ30_05605) rfbC 1178563..1179117 (+) 555 WP_207039569.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  IMZ30_RS05615 (IMZ30_05610) rfbD 1179114..1179962 (+) 849 WP_207039570.1 dTDP-4-dehydrorhamnose reductase -
  IMZ30_RS05620 (IMZ30_05615) - 1179968..1181023 (-) 1056 WP_207039571.1 rhodanese-related sulfurtransferase -
  IMZ30_RS05625 (IMZ30_05620) recA 1181348..1182370 (+) 1023 WP_207039572.1 recombinase RecA Machinery gene
  IMZ30_RS05630 (IMZ30_05625) - 1182419..1182829 (+) 411 WP_207039573.1 hypothetical protein -
  IMZ30_RS05635 (IMZ30_05630) - 1182833..1183378 (+) 546 WP_207039574.1 RNA polymerase sigma factor -
  IMZ30_RS05640 (IMZ30_05635) - 1183378..1184622 (+) 1245 WP_207039575.1 hypothetical protein -
  IMZ30_RS05645 (IMZ30_05640) - 1184676..1185620 (+) 945 WP_207039576.1 HU family DNA-binding protein -
  IMZ30_RS05650 (IMZ30_05645) - 1185675..1186181 (+) 507 WP_073192527.1 acyl-CoA thioesterase -
  IMZ30_RS05655 (IMZ30_05650) - 1186200..1186637 (+) 438 WP_073192526.1 hypothetical protein -
  IMZ30_RS05660 (IMZ30_05655) rpmA 1186713..1186973 (-) 261 WP_207039577.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36955.38 Da        Isoelectric Point: 5.1975

>NTDB_id=492120 IMZ30_RS05625 WP_207039572.1 1181348..1182370(+) (recA) [Psychroflexus sp. ALD_RP9]
MAKDNKEQDAKLKALKLTLDKLDKTYGKGTVMKMSDQAVEDVDAISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTL
TLHAIAEAQKAGGIAAFIDAEHAFDRVYAEKLGVDIDNLIISQPDHGEQALEIADNLIRSGAIDIVIVDSVAALTPKSEI
EGEMGDSKMGLHARLMSQALRKLTSSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSN
SDVMGNKTRVKVVKNKVAPPFKMAEFDIMYGEGISKIGEIIDIGVDYEIVKKAGSWFSYEDTKLGQGRDAVKTLLKDNPE
LMEELEEKIIDAIKLAKAEE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=492120 IMZ30_RS05625 WP_207039572.1 1181348..1182370(+) (recA) [Psychroflexus sp. ALD_RP9]
ATGGCAAAAGATAATAAAGAACAAGACGCAAAATTAAAGGCTTTAAAACTCACTTTAGATAAATTAGATAAAACCTACGG
TAAAGGTACTGTAATGAAAATGAGTGACCAAGCCGTAGAAGATGTTGATGCAATATCTTCGGGATCTTTAGGTTTAGATT
TAGCTTTAGGTGTTGGAGGCTATCCCAGAGGAAGAGTTATAGAAATATATGGTCCAGAATCTTCAGGTAAAACTACTTTA
ACCCTTCATGCTATTGCAGAAGCTCAAAAGGCAGGAGGAATAGCCGCATTTATCGATGCTGAACATGCATTTGATCGCGT
CTATGCAGAAAAGCTAGGTGTAGATATAGACAATCTAATTATTTCTCAGCCAGATCATGGTGAGCAGGCTCTTGAAATTG
CAGATAATCTTATTCGTTCAGGTGCTATCGATATCGTGATTGTAGATTCTGTTGCTGCACTTACTCCTAAAAGCGAAATA
GAAGGTGAAATGGGTGATTCTAAAATGGGTCTTCACGCACGTTTAATGTCTCAAGCTTTAAGGAAATTAACTTCATCTAT
TAGCAAAACTAATTGTACGGTTATCTTCATAAATCAATTACGTGAAAAAATAGGGGTCATGTTCGGTAACCCTGAAACAA
CAACAGGTGGTAATGCTTTGAAGTTTTATGCCTCGGTAAGATTAGATATTAGACGCTCTACACAAATTAAAAACAGCAAT
AGTGATGTTATGGGTAATAAAACCCGTGTAAAAGTTGTCAAAAATAAAGTAGCGCCACCTTTTAAAATGGCTGAGTTTGA
TATTATGTATGGTGAAGGTATCTCAAAAATTGGAGAAATTATTGACATAGGTGTAGATTATGAAATTGTTAAAAAGGCTG
GTTCATGGTTTAGTTATGAAGATACAAAATTAGGGCAAGGCCGTGATGCGGTAAAAACCCTACTTAAAGACAATCCTGAA
TTGATGGAAGAGCTTGAAGAAAAAATCATAGATGCTATAAAATTAGCTAAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

77.064

96.176

0.741
  recA Neisseria gonorrhoeae MS11

66.46

94.706

0.629
  recA Neisseria gonorrhoeae strain FA1090

66.46

94.706

0.629
  recA Neisseria gonorrhoeae MS11

66.46

94.706

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

95.882

0.615
  recA Acinetobacter baylyi ADP1

64.798

94.412

0.612
  recA Helicobacter pylori strain NCTC11637

64.198

95.294

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.823

92.941

0.612
  recA Helicobacter pylori 26695

63.889

95.294

0.609
  recA Acinetobacter baumannii D1279779

64.577

93.824

0.606
  recA Ralstonia pseudosolanacearum GMI1000

66.883

90.588

0.606
  recA Glaesserella parasuis strain SC1401

63.158

95

0.6
  recA Streptococcus mitis NCTC 12261

61.631

97.353

0.6
  recA Streptococcus mitis SK321

61.631

97.353

0.6
  recA Streptococcus pneumoniae Rx1

60.725

97.353

0.591
  recA Streptococcus pneumoniae TIGR4

60.725

97.353

0.591
  recA Streptococcus pneumoniae R6

60.725

97.353

0.591
  recA Streptococcus pneumoniae D39

60.725

97.353

0.591
  recA Streptococcus pyogenes NZ131

61.728

95.294

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

100

0.585
  recA Vibrio cholerae strain A1552

62.382

93.824

0.585
  recA Pseudomonas stutzeri DSM 10701

62.382

93.824

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.382

93.824

0.585
  recA Streptococcus mutans UA159

60.185

95.294

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60

94.118

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.798

97.353

0.553