Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IL331_RS02800 Genome accession   NZ_CP062698
Coordinates   600020..601147 (-) Length   375 a.a.
NCBI ID   WP_218081616.1    Uniprot ID   -
Organism   Anthocerotibacter panamensis C109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595020..606147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL331_RS02790 - 597620..598525 (-) 906 WP_218081614.1 DMT family transporter -
  IL331_RS02795 - 598576..600027 (-) 1452 WP_218081615.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  IL331_RS02800 recA 600020..601147 (-) 1128 WP_218081616.1 recombinase RecA Machinery gene
  IL331_RS02805 - 601240..601368 (+) 129 WP_218081617.1 DUF4058 family protein -
  IL331_RS20370 - 601499..601988 (+) 490 Protein_554 Uma2 family endonuclease -
  IL331_RS02815 purL 602052..604349 (+) 2298 WP_218081618.1 phosphoribosylformylglycinamidine synthase subunit PurL -
  IL331_RS02820 - 604396..605136 (+) 741 WP_218081619.1 biotin--[acetyl-CoA-carboxylase] ligase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 40277.05 Da        Isoelectric Point: 5.0936

>NTDB_id=490537 IL331_RS02800 WP_218081616.1 600020..601147(-) (recA) [Anthocerotibacter panamensis C109]
MARGSSNGAGAKAAAALEDKQNEKQKALQAVLGQIKKTFGEGSIMRLGENTQMRVETVPSGALNLDVALGGGIPRGRVIE
IYGPESSGKTTLALHVVAEVQKRGGIAAFVDAEHALDPVYAAALGVDTDNLLIAQPDTGESALEIVDQLVRSAAVEIIVI
DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITANVSRTNCIVIFLNQLRQKIGVMYGNPETTTGGQALKFYASLRL
DIRRLESLKRGQEEYGNRVRVKVVKNKVAPPFRKAEFDIIFGKGISSVGCVLDLAVETDIIERKGAWYVCQGERYQGREN
LLTALSEKPAVVAELDRLVRAKLAAGTEVPSMAVKPGPDDLEEDTDLEPDFSMDD

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=490537 IL331_RS02800 WP_218081616.1 600020..601147(-) (recA) [Anthocerotibacter panamensis C109]
ATGGCACGCGGCAGCAGCAATGGAGCTGGGGCGAAAGCGGCAGCAGCACTAGAAGACAAGCAGAACGAGAAGCAAAAAGC
GCTCCAGGCGGTGTTGGGGCAAATTAAAAAGACTTTTGGCGAAGGGTCGATTATGCGGCTGGGGGAGAACACCCAGATGC
GCGTCGAAACCGTTCCTAGCGGAGCCCTCAACCTGGATGTCGCCCTCGGAGGCGGTATCCCTCGCGGACGGGTCATCGAA
ATTTATGGCCCAGAGTCCTCCGGTAAGACCACCCTCGCCCTCCATGTGGTCGCTGAAGTCCAAAAACGAGGCGGGATTGC
TGCTTTTGTAGACGCCGAACATGCCCTCGATCCCGTCTATGCTGCGGCTCTAGGGGTGGACACCGACAATCTGCTCATTG
CCCAACCCGATACCGGTGAGTCCGCCCTAGAGATCGTAGACCAGCTGGTGCGCTCCGCTGCCGTCGAGATCATCGTGATT
GATTCTGTTGCAGCGCTCGTCCCGCGTGCGGAGATCGAAGGCGAGATGGGCGATAGCCATGTTGGTTTGCAGGCACGTCT
GATGAGTCAGGCTCTGCGCAAAATCACCGCCAATGTGAGCCGAACCAACTGTATTGTCATCTTCCTCAACCAACTGCGCC
AGAAAATCGGGGTCATGTACGGCAACCCCGAGACGACTACGGGCGGTCAGGCGCTCAAGTTTTACGCCTCCTTGCGTCTG
GATATCCGCCGGTTGGAGAGCCTCAAGCGCGGTCAGGAAGAGTATGGCAACCGTGTGCGCGTCAAAGTGGTCAAAAATAA
AGTAGCCCCGCCCTTCCGTAAAGCCGAGTTCGACATTATCTTCGGCAAAGGGATCTCCTCCGTGGGCTGTGTCCTGGACC
TCGCGGTCGAGACCGATATCATCGAGCGCAAAGGAGCTTGGTATGTCTGCCAAGGAGAACGCTATCAAGGTCGAGAAAAC
CTCCTCACCGCGCTTTCTGAGAAACCTGCGGTCGTCGCAGAACTAGACCGCTTGGTCCGAGCCAAACTCGCCGCAGGGAC
CGAAGTGCCCTCCATGGCGGTCAAACCGGGACCGGATGACCTGGAAGAGGACACAGACCTCGAACCGGATTTCAGCATGG
ATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

57.703

95.2

0.549
  recA Acinetobacter baylyi ADP1

59.195

92.8

0.549
  recA Ralstonia pseudosolanacearum GMI1000

61.747

88.533

0.547
  recA Glaesserella parasuis strain SC1401

57.67

93.867

0.541
  recA Acinetobacter baumannii D1279779

62.112

85.867

0.533
  recA Pseudomonas stutzeri DSM 10701

61.491

85.867

0.528
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

85.6

0.528
  recA Streptococcus pneumoniae D39

54.722

96

0.525
  recA Streptococcus pneumoniae TIGR4

54.722

96

0.525
  recA Streptococcus pneumoniae R6

54.722

96

0.525
  recA Streptococcus pneumoniae Rx1

54.722

96

0.525
  recA Neisseria gonorrhoeae strain FA1090

60.372

86.133

0.52
  recA Neisseria gonorrhoeae MS11

60.372

86.133

0.52
  recA Neisseria gonorrhoeae MS11

60.372

86.133

0.52
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.938

85.867

0.515
  recA Vibrio cholerae strain A1552

59.938

85.867

0.515
  recA Helicobacter pylori 26695

55.942

92

0.515
  recA Helicobacter pylori strain NCTC11637

55.652

92

0.512
  recA Streptococcus mitis SK321

58.41

87.2

0.509
  recA Streptococcus pyogenes NZ131

57.927

87.467

0.507
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.057

88.8

0.507
  recA Streptococcus mitis NCTC 12261

57.798

87.2

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.669

86.933

0.501
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.012

87.467

0.499
  recA Lactococcus lactis subsp. cremoris KW2

57.538

86.667

0.499
  recA Streptococcus mutans UA159

56.269

87.2

0.491