Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ILQ00_RS11765 Genome accession   NZ_CP062473
Coordinates   2516189..2517334 (-) Length   381 a.a.
NCBI ID   WP_057909289.1    Uniprot ID   A0A0R1YYX6
Organism   Lentilactobacillus parabuchneri strain KEM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2511189..2522334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILQ00_RS11755 (ILQ00_11755) - 2513445..2514239 (-) 795 WP_057909287.1 TIGR00282 family metallophosphoesterase -
  ILQ00_RS11760 (ILQ00_11760) rny 2514326..2515906 (-) 1581 WP_057909288.1 ribonuclease Y -
  ILQ00_RS11765 (ILQ00_11765) recA 2516189..2517334 (-) 1146 WP_057909289.1 recombinase RecA Machinery gene
  ILQ00_RS11770 (ILQ00_11770) - 2517429..2517899 (-) 471 WP_057909290.1 CinA family protein -
  ILQ00_RS11775 (ILQ00_11775) pgsA 2518101..2518682 (-) 582 WP_057909291.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ILQ00_RS11780 (ILQ00_11780) - 2518700..2519755 (-) 1056 WP_057909292.1 helix-turn-helix domain-containing protein -
  ILQ00_RS11785 (ILQ00_11785) yfmH 2519864..2521141 (-) 1278 WP_057911124.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41364.73 Da        Isoelectric Point: 5.5622

>NTDB_id=490379 ILQ00_RS11765 WP_057909289.1 2516189..2517334(-) (recA) [Lentilactobacillus parabuchneri strain KEM]
MADQRKVALDKALKNIEKEFGKGSIMRMGDKADTQISTIPSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKDGTNIIGNR
VRIKVVKNKVAPPFKRAEVDVMYGKGISQSGELVDMAVEKDIINKSGSWYSYGDERIGQGRENAKTYLEEHQDMYDEVMK
KVRDAYDIPDDSARSTDSADDKKATGKKADKKSDSKDSHADTKKDEAKEHPDESIDLDIGK

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=490379 ILQ00_RS11765 WP_057909289.1 2516189..2517334(-) (recA) [Lentilactobacillus parabuchneri strain KEM]
ATGGCTGACCAAAGAAAAGTAGCTTTAGACAAAGCCTTAAAAAATATTGAAAAAGAATTCGGTAAGGGATCGATCATGCG
AATGGGGGATAAGGCTGATACCCAAATCTCGACCATTCCATCCGGTTCACTTGCCCTGGATGATGCGTTGGGCGTGGGTG
GCTACCCACGGGGACGAATTGTTGAAATTTATGGGCCTGAAAGTTCAGGTAAAACAACCGTTGCTTTACACGCTGTGGCT
GAAGTCCAAAAGCGTGGCGGAACAGCAGCCTACATTGATGCTGAAAATGCGTTGGATCCAGTTTATGCGACTCATTTAGG
TGTTAACATCGATGATTTGCTCCTGTCACAACCTGATACGGGTGAGCAGGGACTCCAGATTACCGACGCCTTGGTAACCA
GTGGTGCGATCGATATCGTCGTCATTGATTCAGTTGCTGCACTGGTTCCCCGTGCCGAAATTGAAGGGGAAATGGGGGAT
GCTCACGTTGGTTTGCAAGCGCGTTTGATGTCACAAGCTCTTCGGAAACTTTCCGGAACAATTAGTAAGACAAAAACGAT
TGCGATCTTCATCAACCAAATCCGTGAAAAAGTCGGTGTTATGTTTGGAAACCCAGAGACCACTCCTGGTGGCCGGGCGC
TGAAATTTTACGCGACTATTCGGCTTGAAATTCGTCGTGCCGAACAGATCAAGGATGGGACGAACATTATTGGTAACCGG
GTTCGGATCAAGGTTGTCAAGAACAAGGTTGCGCCACCATTCAAGCGTGCCGAAGTTGACGTAATGTATGGTAAGGGAAT
TTCCCAATCCGGTGAGTTGGTTGATATGGCCGTTGAAAAGGATATTATCAACAAGTCCGGTTCATGGTACTCATACGGTG
ACGAACGAATTGGTCAGGGACGTGAAAACGCCAAGACCTATTTGGAAGAACATCAAGATATGTACGATGAGGTTATGAAA
AAAGTTCGTGACGCTTATGATATTCCTGATGATTCCGCACGTTCGACTGATAGTGCCGACGATAAAAAAGCCACTGGCAA
AAAAGCTGATAAGAAGTCGGATTCCAAAGACAGTCATGCCGATACGAAGAAGGATGAAGCTAAAGAGCATCCTGATGAAA
GTATCGATTTGGATATTGGCAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1YYX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.544

88.714

0.732
  recA Bacillus subtilis subsp. subtilis str. 168

72.508

86.877

0.63
  recA Streptococcus pneumoniae D39

65.341

92.388

0.604
  recA Streptococcus pneumoniae Rx1

65.341

92.388

0.604
  recA Streptococcus pneumoniae R6

65.341

92.388

0.604
  recA Streptococcus pneumoniae TIGR4

65.341

92.388

0.604
  recA Lactococcus lactis subsp. cremoris KW2

69.069

87.402

0.604
  recA Streptococcus mutans UA159

64.045

93.438

0.598
  recA Streptococcus pyogenes NZ131

68.598

86.089

0.591
  recA Streptococcus mitis NCTC 12261

66.867

87.139

0.583
  recA Streptococcus mitis SK321

66.566

87.139

0.58
  recA Neisseria gonorrhoeae MS11

62.963

85.039

0.535
  recA Neisseria gonorrhoeae MS11

62.963

85.039

0.535
  recA Neisseria gonorrhoeae strain FA1090

62.963

85.039

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

85.302

0.528
  recA Vibrio cholerae strain A1552

58.14

90.289

0.525
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.14

90.289

0.525
  recA Pseudomonas stutzeri DSM 10701

58.358

89.501

0.522
  recA Ralstonia pseudosolanacearum GMI1000

64.401

81.102

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.089

0.517
  recA Glaesserella parasuis strain SC1401

57.602

89.764

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.574

86.352

0.514
  recA Acinetobacter baylyi ADP1

60.185

85.039

0.512
  recA Acinetobacter baumannii D1279779

59.568

85.039

0.507
  recA Helicobacter pylori strain NCTC11637

58.025

85.039

0.493
  recA Helicobacter pylori 26695

58.025

85.039

0.493