Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IHE33_RS10185 Genome accession   NZ_CP062168
Coordinates   2322382..2323446 (-) Length   354 a.a.
NCBI ID   WP_104076770.1    Uniprot ID   A0A2P5KCQ2
Organism   Mycetohabitans endofungorum strain B60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2317382..2328446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE33_RS10160 (IHE33_10035) - 2318040..2318753 (-) 714 WP_338925762.1 TerC family protein -
  IHE33_RS10165 (IHE33_10040) sucD 2318940..2319821 (-) 882 WP_041754466.1 succinate--CoA ligase subunit alpha -
  IHE33_RS10170 (IHE33_10045) sucC 2319908..2321074 (-) 1167 WP_076786139.1 ADP-forming succinate--CoA ligase subunit beta -
  IHE33_RS10175 (IHE33_10050) - 2321086..2321739 (-) 654 WP_338925763.1 DUF2889 domain-containing protein -
  IHE33_RS10180 (IHE33_10055) recX 2321899..2322375 (-) 477 WP_338925764.1 recombination regulator RecX -
  IHE33_RS10185 (IHE33_10060) recA 2322382..2323446 (-) 1065 WP_104076770.1 recombinase RecA Machinery gene
  IHE33_RS10190 (IHE33_10065) - 2323770..2323993 (+) 224 Protein_1981 response regulator -
  IHE33_RS10200 (IHE33_10075) - 2324319..2324465 (+) 147 WP_338925765.1 hypothetical protein -
  IHE33_RS10205 (IHE33_10080) - 2324791..2326164 (+) 1374 WP_338925766.1 hypothetical protein -
  IHE33_RS10210 (IHE33_10085) - 2326232..2326390 (+) 159 Protein_1984 LysR family transcriptional regulator -
  IHE33_RS10215 (IHE33_10090) ydiK 2326525..2327616 (+) 1092 WP_338925767.1 AI-2E family transporter YdiK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37748.33 Da        Isoelectric Point: 5.8957

>NTDB_id=486748 IHE33_RS10185 WP_104076770.1 2322382..2323446(-) (recA) [Mycetohabitans endofungorum strain B60]
MEESKKGSAGLTAEKSKALAAALSQIEKQFGKGSIMRLGHGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNASELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRHGEIIDLGVQAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPDLAREIENRVRESLGVVAMPAGAVVGESGQA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=486748 IHE33_RS10185 WP_104076770.1 2322382..2323446(-) (recA) [Mycetohabitans endofungorum strain B60]
ATGGAAGAAAGCAAGAAAGGCTCAGCTGGACTGACTGCGGAGAAGAGCAAGGCACTGGCTGCCGCGCTGTCGCAGATCGA
GAAGCAGTTCGGTAAGGGGTCGATCATGCGACTTGGCCATGGCGAGGCAGTCGAAGACATTCAAGTCGTATCGACTGGCT
CGCTCGGCCTAGATATTGCGCTAGGCGTCGGTGGATTGCCGCGTGGCCGTGTCGTCGAGATTTACGGGCCGGAATCGTCC
GGCAAGACGACGCTCACACTGCAAGTAATCGCCGAGATGCAGAAAATTGGTGGCACCTGCGCGTTTATCGACGCGGAACA
CGCGCTCGATGTCCAGTATGCGTCCAAGCTGGGCGTCAACGCGTCGGAACTGCTGATTTCTCAACCCGATACTGGCGAGC
AGGCACTGGAAATCGCCGATGCACTCGTGCGCTCGGGGTCGATCGACATGATCGTCATCGACTCGGTGGCCGCGCTCGTG
CCAAAGGCCGAAATCGAAGGTGAAATGGGCGATTCACTGCCTGGCCTGCAGGCGCGGCTGATGTCGCAGGCGCTGCGCAA
GCTGACCGGAACGATCAAGCGGACCAATTGCCTGGTCATCTTTATTAACCAGATTCGCATGAAGATCGGCGTGATGTTCG
GTAACCCGGAAACCACCACCGGCGGCAATGCGTTGAAGTTTTACGCGTCGGTCCGGCTCGATATCCGTCGGATCGGCTCG
ATCAAGAAGAACGATGAAGTCATCGGTAACGAAACGCGGGTTAAGGTGGTCAAAAACAAAGTGTCGCCACCGTTTCGCGA
GGCGATTTTCGATATCTTGTATGGCGAGGGGATTTCGCGACACGGTGAAATCATTGATCTTGGTGTCCAGGCGAAAATCG
TCGAGAAGGCGGGTGCCTGGTATAGCTACAACGGCGAGAAGATCGGCCAGGGCAAAGACAATGCGCGGGAGTTCCTGCGT
GAAAATCCAGACCTTGCGCGCGAGATCGAAAATCGCGTCCGCGAGTCGCTTGGCGTCGTGGCGATGCCGGCCGGCGCGGT
AGTCGGCGAGAGCGGACAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P5KCQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.591

98.023

0.839
  recA Acinetobacter baylyi ADP1

75.232

91.243

0.686
  recA Glaesserella parasuis strain SC1401

70.058

97.175

0.681
  recA Neisseria gonorrhoeae MS11

73.252

92.938

0.681
  recA Neisseria gonorrhoeae MS11

73.252

92.938

0.681
  recA Neisseria gonorrhoeae strain FA1090

73.252

92.938

0.681
  recA Pseudomonas stutzeri DSM 10701

73.394

92.373

0.678
  recA Acinetobacter baumannii D1279779

73.994

91.243

0.675
  recA Vibrio cholerae strain A1552

73.065

91.243

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.065

91.243

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

92.938

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.565

94.068

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.373

0.602
  recA Helicobacter pylori 26695

65.337

92.09

0.602
  recA Helicobacter pylori strain NCTC11637

65.031

92.09

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

62.236

93.503

0.582
  recA Streptococcus mitis SK321

60.534

95.198

0.576
  recA Streptococcus mitis NCTC 12261

60.534

95.198

0.576
  recA Streptococcus mutans UA159

61.329

93.503

0.573
  recA Streptococcus pneumoniae Rx1

60.237

95.198

0.573
  recA Streptococcus pneumoniae D39

60.237

95.198

0.573
  recA Streptococcus pneumoniae R6

60.237

95.198

0.573
  recA Streptococcus pneumoniae TIGR4

60.237

95.198

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.778

94.35

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.617

90.678

0.568
  recA Streptococcus pyogenes NZ131

61.094

92.938

0.568