Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IHE43_RS02725 Genome accession   NZ_CP062159
Coordinates   648280..649287 (-) Length   335 a.a.
NCBI ID   WP_192188141.1    Uniprot ID   A0A7L8UIP5
Organism   Flavobacterium sp. MDT1-60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 643280..654287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE43_RS02705 (IHE43_02705) - 643311..644273 (-) 963 WP_192186561.1 SPOR domain-containing protein -
  IHE43_RS02710 (IHE43_02710) dprA 644532..645632 (+) 1101 WP_192186562.1 DNA-processing protein DprA -
  IHE43_RS02715 (IHE43_02715) trpS 645711..646685 (-) 975 WP_192186563.1 tryptophan--tRNA ligase -
  IHE43_RS02720 (IHE43_02720) - 646969..647724 (+) 756 WP_192186564.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  IHE43_RS02725 (IHE43_02725) recA 648280..649287 (-) 1008 WP_192188141.1 recombinase RecA Machinery gene
  IHE43_RS02730 (IHE43_02730) - 649453..649962 (-) 510 WP_056196638.1 acyl-CoA thioesterase -
  IHE43_RS02735 (IHE43_02735) - 650039..650422 (-) 384 WP_192186565.1 DoxX family protein -
  IHE43_RS02740 (IHE43_02740) - 650429..651577 (-) 1149 WP_192186566.1 DNA polymerase III subunit delta' -
  IHE43_RS02745 (IHE43_02745) - 652014..652466 (+) 453 WP_192186567.1 hypothetical protein -
  IHE43_RS02750 (IHE43_02750) - 652659..653948 (+) 1290 WP_192186568.1 hypothetical protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36163.48 Da        Isoelectric Point: 6.1751

>NTDB_id=486573 IHE43_RS02725 WP_192188141.1 648280..649287(-) (recA) [Flavobacterium sp. MDT1-60]
MSSEKEAKLKALQLTLDKLDKTYGKGTVMKMGDKAIVEVETISSGSLGVDLALGVNGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRNYAEKLGVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGTISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSSQIKDGENVI
GNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEIVKKAGSWFSYGDTKLGQGRDAVKSLIKDNPELADE
LEAKIKAHIKELANA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=486573 IHE43_RS02725 WP_192188141.1 648280..649287(-) (recA) [Flavobacterium sp. MDT1-60]
ATGAGTTCAGAAAAAGAAGCCAAATTAAAAGCGTTACAACTTACGCTTGACAAACTAGATAAGACCTACGGAAAAGGAAC
CGTAATGAAAATGGGCGATAAAGCCATTGTAGAAGTTGAAACTATTTCTTCAGGTTCTCTTGGTGTTGATTTAGCACTTG
GAGTAAACGGTTATCCAAAAGGAAGAATTATCGAAATATACGGACCAGAATCTTCTGGTAAAACGACTTTAACTTTACAC
GCAATTGCCGAAGCTCAGAAAGCAGGCGGAATTGCCGCTTTTATAGATGCTGAACATGCTTTTGATAGAAATTATGCCGA
AAAATTAGGCGTTGATATCGAAAACCTGATCATCTCTCAGCCAGACAACGGAGAACAAGCTTTAGAAATTGCCGAAAACT
TAATTCGTTCCGGAGCAATTGATATTGTTGTAATTGACTCGGTTGCTGCATTAACTCCAAAAAGTGAGATTGAAGGCGAA
ATGGGAGATTCTAAAATGGGTCTTCACGCACGTTTGATGTCTCAGGCTTTAAGAAAATTAACAGGAACTATCAGTAAAAC
AAATTGTACTGTTTTCTTCATCAACCAGTTGAGAGAGAAAATTGGTGTGATGTTTGGAAATCCTGAAACTACAACGGGGG
GTAATGCCTTAAAATTCTACGCTTCAGTACGTTTAGACATTCGTCGTTCTTCTCAAATTAAAGATGGAGAAAACGTAATT
GGAAACAGAACTAAAGTAAAAGTGGTCAAAAATAAAGTAGCTCCGCCTTTTAAAACTGCCGAATTCGACATTATGTACGG
AGAAGGGGTTTCTAAAACTGGAGAAATTTTAGATTTGGCGGTTGAATTTGAAATCGTCAAAAAAGCAGGATCCTGGTTTA
GCTACGGTGATACCAAATTAGGACAAGGTCGTGATGCTGTAAAATCTTTAATTAAAGATAATCCGGAATTAGCTGATGAA
TTAGAAGCTAAAATTAAAGCACATATTAAAGAATTAGCAAACGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8UIP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

77.679

100

0.779
  recA Acinetobacter baylyi ADP1

65.528

96.119

0.63
  recA Helicobacter pylori 26695

64.923

97.015

0.63
  recA Helicobacter pylori strain NCTC11637

64.923

97.015

0.63
  recA Acinetobacter baumannii D1279779

65.123

96.716

0.63
  recA Glaesserella parasuis strain SC1401

62.952

99.104

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.312

95.522

0.624
  recA Neisseria gonorrhoeae strain FA1090

64.798

95.821

0.621
  recA Neisseria gonorrhoeae MS11

64.798

95.821

0.621
  recA Neisseria gonorrhoeae MS11

64.798

95.821

0.621
  recA Ralstonia pseudosolanacearum GMI1000

66.559

92.836

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

64.465

94.925

0.612
  recA Streptococcus mitis NCTC 12261

61.42

96.716

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

96.418

0.594
  recA Lactococcus lactis subsp. cremoris KW2

61.801

96.119

0.594
  recA Streptococcus mitis SK321

61.111

96.716

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.682

95.821

0.591
  recA Vibrio cholerae strain A1552

61.682

95.821

0.591
  recA Streptococcus pyogenes NZ131

60.991

96.418

0.588
  recA Streptococcus pneumoniae Rx1

61.18

96.119

0.588
  recA Streptococcus pneumoniae D39

61.18

96.119

0.588
  recA Streptococcus pneumoniae R6

61.18

96.119

0.588
  recA Streptococcus pneumoniae TIGR4

61.18

96.119

0.588
  recA Pseudomonas stutzeri DSM 10701

60.185

96.716

0.582
  recA Streptococcus mutans UA159

59.443

96.418

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.075

96.119

0.558