Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IF654_RS06050 Genome accession   NZ_CP062158
Coordinates   1231472..1232590 (+) Length   372 a.a.
NCBI ID   WP_047278651.1    Uniprot ID   -
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1226472..1237590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS06030 (IF654_04890) mutS 1226707..1229286 (-) 2580 WP_047274125.1 DNA mismatch repair protein MutS -
  IF654_RS06035 (IF654_04885) - 1229479..1230189 (+) 711 WP_194862668.1 XRE family transcriptional regulator -
  IF654_RS06040 (IF654_04880) - 1230462..1230776 (+) 315 WP_047274129.1 phage holin family protein -
  IF654_RS06045 (IF654_04875) - 1230888..1231388 (+) 501 WP_194862880.1 CinA family protein -
  IF654_RS06050 (IF654_04870) recA 1231472..1232590 (+) 1119 WP_047278651.1 recombinase RecA Machinery gene
  IF654_RS06055 (IF654_04865) recX 1232598..1233065 (+) 468 WP_047274135.1 recombination regulator RecX -
  IF654_RS06060 (IF654_04860) - 1233163..1234263 (-) 1101 WP_194862667.1 TIGR00730 family Rossman fold protein -
  IF654_RS06065 (IF654_04855) - 1234470..1234880 (-) 411 WP_047278646.1 PA3611 family quorum-sensing-regulated virulence factor -
  IF654_RS06070 (IF654_04850) - 1235108..1235860 (+) 753 WP_047279228.1 tRNA-uridine aminocarboxypropyltransferase -
  IF654_RS06075 (IF654_04845) erdR 1236156..1236806 (+) 651 WP_047274141.1 response regulator transcription factor ErdR -
  IF654_RS06080 (IF654_04840) - 1236880..1237242 (+) 363 WP_047274143.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39709.54 Da        Isoelectric Point: 5.1874

>NTDB_id=486561 IF654_RS06050 WP_047278651.1 1231472..1232590(+) (recA) [Pseudomonas lundensis strain 2T.2.5.2]
MDDNKKKALAAALGQIERQFGKGAVMLMGDQERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIIDSVAALTPKAEIEGDMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDVVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIELGVLHGFVEKAGAWYSYQGSKIGQGKANSAKFLDENPDIKAALEK
QLRDKLLGPKTESELAEMKVMPKMSKAAKQAAAEQEAAEMELENTGSDDDSN

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=486561 IF654_RS06050 WP_047278651.1 1231472..1232590(+) (recA) [Pseudomonas lundensis strain 2T.2.5.2]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAAGGCGCCGTCATGCT
GATGGGCGATCAGGAGCGCCAGGCCATCCCGGCTATTTCTACCGGTTCGCTGGGCCTGGACATCGCGCTGGGCATTGGCG
GTCTGCCAAAGGGCCGCATTGTTGAAATCTACGGTCCAGAGTCTTCCGGTAAAACCACACTGACCCTGTCCGTTATCGCG
CAAGCCCAAAAAGCGGGCGCCACCTGCGCATTCGTCGACGCTGAACATGCGCTGGACCCTGAATACGCTGCCAAGCTTGG
CGTGAATGTTGATGACCTGCTGGTTTCCCAGCCTGACACCGGCGAACAGGCACTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTTGACGTGATCATCATTGACTCCGTGGCAGCCCTGACGCCTAAAGCGGAAATTGAAGGCGACATGGGTGAT
ACCCACGTGGGTCTGCAAGCTCGCTTGATGTCGCAAGCCTTGCGCAAAATTACTGGCAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTACGCTTCGGTTCGACTGGACATCCGTCGTACCGGTGCAGTGAAAGAAGGCGACGTCGTAGTCGGCAGCGAA
ACCCGGGTCAAAGTCGTCAAAAACAAAGTGGCACCTCCCTTCCGCCAGGCAGAATTCCAGATTCTGTACGGCAAGGGCAT
TTACCTCAATGGCGAGATGATCGAGCTGGGCGTATTGCACGGTTTCGTTGAAAAAGCCGGTGCCTGGTACAGCTATCAGG
GCAGCAAAATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCGATGAGAACCCGGACATCAAGGCCGCCCTTGAAAAG
CAGCTGCGTGACAAGCTGTTGGGCCCTAAGACTGAAAGCGAACTGGCTGAAATGAAAGTCATGCCAAAAATGAGCAAGGC
GGCCAAGCAAGCGGCGGCTGAGCAGGAAGCTGCCGAAATGGAGCTTGAAAACACCGGTTCGGACGACGACAGCAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.379

87.903

0.777
  recA Acinetobacter baylyi ADP1

71.031

96.505

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.404

90.591

0.656
  recA Vibrio cholerae strain A1552

72.404

90.591

0.656
  recA Acinetobacter baumannii D1279779

73.716

88.978

0.656
  recA Glaesserella parasuis strain SC1401

73.148

87.097

0.637
  recA Ralstonia pseudosolanacearum GMI1000

69.254

90.054

0.624
  recA Neisseria gonorrhoeae MS11

70.679

87.097

0.616
  recA Neisseria gonorrhoeae MS11

70.679

87.097

0.616
  recA Neisseria gonorrhoeae strain FA1090

70.679

87.097

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

87.903

0.565
  recA Helicobacter pylori strain NCTC11637

60.35

92.204

0.556
  recA Helicobacter pylori 26695

59.767

92.204

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

88.978

0.543
  recA Streptococcus pneumoniae D39

54.348

98.925

0.538
  recA Streptococcus pneumoniae TIGR4

54.348

98.925

0.538
  recA Streptococcus pneumoniae R6

54.348

98.925

0.538
  recA Streptococcus pneumoniae Rx1

54.348

98.925

0.538
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

86.29

0.527
  recA Streptococcus mutans UA159

59.385

87.366

0.519
  recA Streptococcus mitis SK321

58.514

86.828

0.508
  recA Streptococcus mitis NCTC 12261

58.514

86.828

0.508
  recA Streptococcus pyogenes NZ131

57.622

88.172

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

87.097

0.497
  recA Latilactobacillus sakei subsp. sakei 23K

56.698

86.29

0.489
  recA Lactococcus lactis subsp. cremoris KW2

56.037

86.828

0.487