Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IG196_RS30185 Genome accession   NZ_CP062121
Coordinates   6500264..6501376 (-) Length   370 a.a.
NCBI ID   WP_099794154.1    Uniprot ID   A0A2G6X1P9
Organism   Variovorax sp. 38R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6495264..6506376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG196_RS30160 (IG196_30160) - 6496778..6497728 (-) 951 WP_192194174.1 bestrophin family protein -
  IG196_RS30165 (IG196_30165) - 6498024..6498758 (-) 735 WP_192194175.1 hypothetical protein -
  IG196_RS30170 (IG196_30170) yiaA 6498872..6499312 (+) 441 WP_192194176.1 inner membrane protein YiaA -
  IG196_RS30175 (IG196_30175) - 6499325..6499765 (-) 441 WP_192194177.1 SRPBCC family protein -
  IG196_RS30180 (IG196_30180) recX 6499734..6500207 (-) 474 WP_101490790.1 recombination regulator RecX -
  IG196_RS30185 (IG196_30185) recA 6500264..6501376 (-) 1113 WP_099794154.1 recombinase RecA Machinery gene
  IG196_RS30190 (IG196_30190) - 6501522..6502007 (+) 486 WP_192194178.1 MarR family winged helix-turn-helix transcriptional regulator -
  IG196_RS30195 (IG196_30195) - 6502072..6502746 (+) 675 WP_192194179.1 response regulator transcription factor -
  IG196_RS30200 (IG196_30200) - 6502814..6504256 (+) 1443 WP_101490785.1 sensor histidine kinase -
  IG196_RS30205 (IG196_30205) - 6504253..6504987 (+) 735 WP_192194180.1 HEAT repeat domain-containing protein -
  IG196_RS30210 (IG196_30210) - 6504993..6505181 (-) 189 WP_192194181.1 sporulation protein -
  IG196_RS30215 (IG196_30215) - 6505190..6506002 (-) 813 WP_192194182.1 biotin--[acetyl-CoA-carboxylase] ligase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39374.19 Da        Isoelectric Point: 5.2193

>NTDB_id=486150 IG196_RS30185 WP_099794154.1 6500264..6501376(-) (recA) [Variovorax sp. 38R]
MDAVVKGTSISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIASMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIIDKSGAWYAYNGEKIGQGRDNAREF
LRENPDLSREIENKVRESLGIPLLAADAGSEPEKAEKPAKASKADKAAAE

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=486150 IG196_RS30185 WP_099794154.1 6500264..6501376(-) (recA) [Variovorax sp. 38R]
ATGGACGCAGTCGTCAAGGGCACAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTCCAGGCCGCACTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAAGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCTCCATGCAGAAGCAGGCCGGTACCTGCGCCTTCGTCGATGC
CGAGCACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAACAAGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTCATCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGTTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTGAGCCCGCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTCACGGCCA
AGATCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGACCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTCGCAGCCGA
TGCCGGCAGCGAACCCGAGAAGGCCGAGAAGCCCGCCAAGGCTTCGAAGGCCGACAAGGCGGCAGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G6X1P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.445

86.216

0.711
  recA Neisseria gonorrhoeae strain FA1090

68.406

93.243

0.638
  recA Neisseria gonorrhoeae MS11

68.406

93.243

0.638
  recA Neisseria gonorrhoeae MS11

68.406

93.243

0.638
  recA Pseudomonas stutzeri DSM 10701

71.472

88.108

0.63
  recA Acinetobacter baylyi ADP1

71.472

88.108

0.63
  recA Acinetobacter baumannii D1279779

70.859

88.108

0.624
  recA Glaesserella parasuis strain SC1401

71.296

87.568

0.624
  recA Vibrio cholerae strain A1552

68.997

88.919

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.997

88.919

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.217

93.243

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.282

91.081

0.595
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

88.378

0.573
  recA Streptococcus mutans UA159

59.155

95.946

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

89.189

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.934

89.459

0.554
  recA Streptococcus mitis SK321

59.249

93.514

0.554
  recA Streptococcus pyogenes NZ131

62.006

88.919

0.551
  recA Streptococcus pneumoniae R6

61.027

89.459

0.546
  recA Streptococcus pneumoniae Rx1

61.027

89.459

0.546
  recA Streptococcus pneumoniae D39

61.027

89.459

0.546
  recA Streptococcus pneumoniae TIGR4

61.027

89.459

0.546
  recA Streptococcus mitis NCTC 12261

60.725

89.459

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

86.757

0.53