Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IEJ03_RS13865 Genome accession   NZ_CP062005
Coordinates   3021964..3023025 (-) Length   353 a.a.
NCBI ID   WP_192035399.1    Uniprot ID   -
Organism   Halomonas sp. YLGW01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3016964..3028025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEJ03_RS13850 - 3017358..3018611 (-) 1254 WP_192035396.1 aspartate kinase -
  IEJ03_RS13855 alaS 3018718..3021327 (-) 2610 WP_192035397.1 alanine--tRNA ligase -
  IEJ03_RS13860 - 3021463..3021960 (-) 498 WP_192035398.1 regulatory protein RecX -
  IEJ03_RS13865 recA 3021964..3023025 (-) 1062 WP_192035399.1 recombinase RecA Machinery gene
  IEJ03_RS13870 - 3023129..3023668 (-) 540 WP_192037337.1 CinA family protein -
  IEJ03_RS13875 mutS 3023887..3026496 (+) 2610 WP_192035400.1 DNA mismatch repair protein MutS -
  IEJ03_RS13880 fdxA 3026811..3027134 (+) 324 WP_192035401.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37754.93 Da        Isoelectric Point: 4.9151

>NTDB_id=485904 IEJ03_RS13865 WP_192035399.1 3021964..3023025(-) (recA) [Halomonas sp. YLGW01]
MAQDDNRSKALNAALTQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPLGRVVEIYGPESSGKTTLTLSV
IAQAQKQGKTCAFVDAEHALDPSYAEKLGVNLDDLLVSQPDNGEQALEICDMLVRSGGVDVIIVDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCNLVDKAGAWYSYKGSKIGQGKANAAQYLEDNPAIMEEI
ESQIRAQLLTQAEPKDDKAEGEAVASDELDDKA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=485904 IEJ03_RS13865 WP_192035399.1 3021964..3023025(-) (recA) [Halomonas sp. YLGW01]
ATGGCACAGGACGACAATCGCTCCAAGGCATTGAACGCGGCGCTCACCCAGATCGATCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTGGGCGACGCGCCGCGCGTGGTGATGCCATCGGTCTCCACCGGCTCGCTGGGCCTGGATATCGCGCTCGGCA
TCGGCGGCTTGCCGCTGGGCCGGGTCGTCGAGATCTACGGGCCGGAGTCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCCAGGCGCAGAAGCAGGGCAAGACCTGCGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGAGCTACGCCGAGAA
GCTGGGCGTCAATCTCGATGACCTGCTGGTCTCCCAGCCGGATAACGGCGAGCAGGCGTTGGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATCATCGTCGACTCGGTTGCGGCGTTGACGCCGCGGGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACTACCACCGGCGGCA
ACGCCCTGAAGTTCTACTCCAGCGTGCGCCTGGACATCCGCCGCACCGGTTCGGTGAAGCAGGGCGACGAGGTGACCGGC
AACGAGACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTATGGCAA
GGGCATCTATCATGCCGGCGAGGTGGTCGATCTCGGTGTGCAGTGCAACCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACAAGGGCAGCAAGATCGGTCAGGGCAAGGCCAATGCCGCCCAGTACCTCGAGGATAATCCGGCGATCATGGAAGAGATC
GAGAGCCAGATCCGCGCCCAGCTGCTGACTCAGGCCGAACCCAAGGATGACAAGGCCGAAGGCGAAGCGGTGGCAAGCGA
CGAGCTCGACGACAAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.548

95.184

0.776
  recA Acinetobacter baylyi ADP1

73.926

98.867

0.731
  recA Acinetobacter baumannii D1279779

76.147

92.635

0.705
  recA Glaesserella parasuis strain SC1401

67.422

100

0.674
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.948

92.635

0.657
  recA Vibrio cholerae strain A1552

70.948

92.635

0.657
  recA Neisseria gonorrhoeae MS11

70.898

91.501

0.649
  recA Neisseria gonorrhoeae MS11

70.898

91.501

0.649
  recA Neisseria gonorrhoeae strain FA1090

70.898

91.501

0.649
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.102

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

92.351

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

94.618

0.589
  recA Helicobacter pylori 26695

61.078

94.618

0.578
  recA Streptococcus pyogenes NZ131

57.224

100

0.572
  recA Helicobacter pylori strain NCTC11637

60.479

94.618

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

90.652

0.567
  recA Streptococcus mutans UA159

56.657

100

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

58.457

95.467

0.558
  recA Streptococcus mitis NCTC 12261

59.509

92.351

0.55
  recA Streptococcus mitis SK321

59.202

92.351

0.547
  recA Streptococcus pneumoniae Rx1

58.282

92.351

0.538
  recA Streptococcus pneumoniae D39

58.282

92.351

0.538
  recA Streptococcus pneumoniae R6

58.282

92.351

0.538
  recA Streptococcus pneumoniae TIGR4

58.282

92.351

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.204

91.501

0.533
  recA Lactococcus lactis subsp. cremoris KW2

55.864

91.785

0.513