Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ID165_RS25820 Genome accession   NZ_CP061947
Coordinates   6230902..6231942 (+) Length   346 a.a.
NCBI ID   WP_192348256.1    Uniprot ID   -
Organism   Algoriphagus sp. Y33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6225902..6236942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID165_RS25790 rpsI 6226079..6226465 (-) 387 WP_192348250.1 30S ribosomal protein S9 -
  ID165_RS25795 rplM 6226475..6226918 (-) 444 WP_192348251.1 50S ribosomal protein L13 -
  ID165_RS25800 - 6227099..6227809 (-) 711 WP_192348252.1 RluA family pseudouridine synthase -
  ID165_RS25805 - 6227889..6228965 (-) 1077 WP_192348253.1 cell wall metabolism sensor histidine kinase WalK -
  ID165_RS25810 - 6228966..6229658 (-) 693 WP_192348254.1 response regulator -
  ID165_RS25815 - 6229810..6230601 (-) 792 WP_192348255.1 DUF3108 domain-containing protein -
  ID165_RS25820 recA 6230902..6231942 (+) 1041 WP_192348256.1 recombinase RecA Machinery gene
  ID165_RS25825 - 6232038..6233285 (-) 1248 WP_192348257.1 ABC transporter permease -
  ID165_RS25830 queA 6233416..6234465 (+) 1050 WP_192348258.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ID165_RS25835 - 6234818..6235498 (+) 681 WP_192348259.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ID165_RS25840 - 6235638..6236468 (+) 831 WP_192348260.1 LiaI-LiaF-like domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36982.70 Da        Isoelectric Point: 5.8941

>NTDB_id=485703 ID165_RS25820 WP_192348256.1 6230902..6231942(+) (recA) [Algoriphagus sp. Y33]
MSNNAEKLKALQLTIDKLDKTYGKGTVMKLSDNKVVDVPAISTGSLGLDIALGVGGIPRGRVIEIYGPESSGKTTLTLHC
IAEAQKAGGLAAFIDAEHAFDKSYAEKLGIDTENLLISQPDNGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGEM
GDSKMGLQARLMSQALRKLTGAINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADNIL
GNRTKVKVVKNKVAPPFKVVEFDIMYGQGISKVGEIIDLGVELDIVKKAGSWFSYNGEKLGQGREAVKTLLLDNPELMEE
LEVKIKAASGLSSPKAASAGEVIEKE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=485703 ID165_RS25820 WP_192348256.1 6230902..6231942(+) (recA) [Algoriphagus sp. Y33]
ATGAGTAATAACGCTGAAAAATTAAAAGCCCTGCAATTGACTATCGACAAGCTGGACAAAACTTACGGCAAAGGCACCGT
GATGAAGTTAAGCGATAATAAGGTTGTGGATGTCCCGGCTATCTCTACCGGTTCGTTGGGGCTGGACATTGCTCTGGGAG
TGGGGGGGATTCCCCGCGGTCGTGTGATAGAGATTTATGGTCCAGAATCTTCAGGAAAGACTACCTTGACTTTACATTGT
ATAGCTGAGGCGCAGAAGGCGGGTGGTTTGGCTGCCTTTATTGATGCGGAGCATGCCTTTGATAAGAGCTATGCGGAGAA
ACTGGGGATAGATACAGAAAATCTTCTCATCTCTCAACCGGACAATGGGGAGCAGGCGCTTGAAATCGCCGAGCATTTGA
TCCGTTCTGGAGCTATCGATATTATAGTAATTGACTCAGTGGCTGCTTTGGTGCCAAAAGGTGAGTTGGAAGGTGAAATG
GGAGACAGCAAAATGGGCTTACAGGCTAGATTGATGTCTCAGGCTTTGCGTAAGCTTACCGGTGCGATCAACAAGACCGG
CTGTTCTTGTATATTTATTAACCAGCTGCGTGAGAAAATCGGTGTAATGTTCGGTAATCCCGAGACTACTACCGGTGGTA
ATGCTTTGAAATTCTATGCCTCAGTGAGACTTGATATCCGCAGAATCGGTCAGATCAAGGAAAGCGCTGATAATATACTA
GGCAACAGAACCAAAGTGAAAGTGGTGAAAAATAAGGTAGCTCCACCATTTAAAGTTGTAGAATTTGACATCATGTACGG
GCAAGGAATTTCCAAAGTGGGAGAAATAATTGACCTGGGTGTGGAGTTGGACATTGTCAAAAAAGCAGGATCATGGTTTT
CTTACAATGGAGAGAAGCTTGGACAGGGCAGGGAGGCTGTGAAAACCTTACTTCTTGATAACCCGGAACTGATGGAAGAG
CTGGAGGTGAAGATCAAAGCTGCCTCAGGCTTATCTTCCCCCAAGGCAGCAAGTGCAGGTGAAGTGATCGAGAAGGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.121

95.376

0.688
  recA Ralstonia pseudosolanacearum GMI1000

64.928

99.711

0.647
  recA Acinetobacter baumannii D1279779

66.875

92.486

0.618
  recA Acinetobacter baylyi ADP1

65.644

94.22

0.618
  recA Helicobacter pylori strain NCTC11637

64.048

95.665

0.613
  recA Helicobacter pylori 26695

63.746

95.665

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.651

95.954

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

63.222

95.087

0.601
  recA Neisseria gonorrhoeae MS11

62.691

94.509

0.592
  recA Neisseria gonorrhoeae MS11

62.691

94.509

0.592
  recA Neisseria gonorrhoeae strain FA1090

62.691

94.509

0.592
  recA Glaesserella parasuis strain SC1401

62.928

92.775

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.813

92.486

0.581
  recA Vibrio cholerae strain A1552

62.813

92.486

0.581
  recA Pseudomonas stutzeri DSM 10701

62.305

92.775

0.578
  recA Streptococcus pyogenes NZ131

60.671

94.798

0.575
  recA Streptococcus mitis NCTC 12261

60

95.376

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60

95.376

0.572
  recA Streptococcus mitis SK321

60

95.376

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

60.245

94.509

0.569
  recA Streptococcus pneumoniae Rx1

59.394

95.376

0.566
  recA Streptococcus pneumoniae D39

59.394

95.376

0.566
  recA Streptococcus pneumoniae R6

59.394

95.376

0.566
  recA Streptococcus pneumoniae TIGR4

59.394

95.376

0.566
  recA Streptococcus mutans UA159

58.967

95.087

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

94.509

0.555