Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | H2514_RS05130 | Genome accession | NZ_CP061847 |
| Coordinates | 1153394..1154494 (+) | Length | 366 a.a. |
| NCBI ID | WP_084105320.1 | Uniprot ID | - |
| Organism | Lysobacter sp. CW239 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1115291..1154138 | 1153394..1154494 | flank | -744 |
Gene organization within MGE regions
Location: 1115291..1154494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H2514_RS04975 (H2514_04975) | modA | 1115400..1116152 (-) | 753 | WP_036192553.1 | molybdate ABC transporter substrate-binding protein | - |
| H2514_RS04980 (H2514_04980) | ffh | 1116271..1117635 (+) | 1365 | WP_036192552.1 | signal recognition particle protein | - |
| H2514_RS04985 (H2514_04985) | rpsP | 1117729..1118001 (+) | 273 | WP_036192551.1 | 30S ribosomal protein S16 | - |
| H2514_RS04990 (H2514_04990) | rimM | 1118040..1118555 (+) | 516 | WP_036192550.1 | ribosome maturation factor RimM | - |
| H2514_RS04995 (H2514_04995) | trmD | 1118560..1119303 (+) | 744 | WP_036192549.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| H2514_RS05000 (H2514_05000) | rplS | 1119511..1119936 (+) | 426 | WP_036192548.1 | 50S ribosomal protein L19 | - |
| H2514_RS05005 (H2514_05005) | - | 1120106..1120525 (+) | 420 | WP_052103343.1 | RNA-binding S4 domain-containing protein | - |
| H2514_RS05010 (H2514_05010) | - | 1120632..1121228 (-) | 597 | WP_036192886.1 | DUF937 domain-containing protein | - |
| H2514_RS05015 (H2514_05015) | mutS | 1121347..1123908 (-) | 2562 | WP_036192546.1 | DNA mismatch repair protein MutS | - |
| H2514_RS05020 (H2514_05020) | - | 1124101..1125630 (+) | 1530 | WP_052103341.1 | tyrosine-type recombinase/integrase | - |
| H2514_RS05025 (H2514_05025) | - | 1125640..1126278 (+) | 639 | WP_036192545.1 | helix-turn-helix domain-containing protein | - |
| H2514_RS05030 (H2514_05030) | - | 1126491..1127195 (+) | 705 | WP_036192544.1 | hypothetical protein | - |
| H2514_RS05035 (H2514_05035) | - | 1127655..1129655 (+) | 2001 | WP_084105330.1 | site-specific DNA-methyltransferase | - |
| H2514_RS05040 (H2514_05040) | - | 1129639..1132404 (+) | 2766 | WP_084105328.1 | DEAD/DEAH box helicase family protein | - |
| H2514_RS05045 (H2514_05045) | - | 1132417..1134354 (+) | 1938 | WP_052103339.1 | DUF262 domain-containing protein | - |
| H2514_RS05050 (H2514_05050) | - | 1134351..1134794 (+) | 444 | WP_036192543.1 | hypothetical protein | - |
| H2514_RS05055 (H2514_05055) | - | 1135180..1135491 (-) | 312 | WP_036192542.1 | conjugal transfer protein TraD | - |
| H2514_RS05060 (H2514_05060) | - | 1136307..1138355 (+) | 2049 | WP_052103338.1 | MobA/MobL family protein | - |
| H2514_RS05065 (H2514_05065) | - | 1138557..1139183 (+) | 627 | WP_156969272.1 | hypothetical protein | - |
| H2514_RS05070 (H2514_05070) | - | 1139193..1139942 (+) | 750 | WP_036192540.1 | hypothetical protein | - |
| H2514_RS05075 (H2514_05075) | - | 1140007..1140540 (+) | 534 | WP_052103336.1 | hypothetical protein | - |
| H2514_RS05080 (H2514_05080) | - | 1141491..1142414 (+) | 924 | WP_156969271.1 | hypothetical protein | - |
| H2514_RS05085 (H2514_05085) | - | 1142789..1143127 (+) | 339 | WP_156969270.1 | hypothetical protein | - |
| H2514_RS05090 (H2514_05090) | - | 1144003..1144539 (-) | 537 | WP_156969269.1 | hypothetical protein | - |
| H2514_RS05095 (H2514_05095) | - | 1144536..1145726 (-) | 1191 | WP_084105324.1 | XRE family transcriptional regulator | - |
| H2514_RS05100 (H2514_05100) | - | 1145757..1147082 (-) | 1326 | WP_036192535.1 | 7-cyano-7-deazaguanine synthase | - |
| H2514_RS05105 (H2514_05105) | - | 1147072..1147674 (-) | 603 | WP_036192534.1 | hypothetical protein | - |
| H2514_RS05110 (H2514_05110) | - | 1147812..1148570 (-) | 759 | WP_036192533.1 | abortive infection family protein | - |
| H2514_RS05115 (H2514_05115) | - | 1149247..1151859 (+) | 2613 | WP_036192531.1 | TonB-dependent receptor | - |
| H2514_RS05120 (H2514_05120) | - | 1151971..1152471 (+) | 501 | WP_036192510.1 | CinA family protein | - |
| H2514_RS05125 (H2514_05125) | lexA | 1152521..1153219 (+) | 699 | WP_036192508.1 | transcriptional repressor LexA | - |
| H2514_RS05130 (H2514_05130) | recA | 1153394..1154494 (+) | 1101 | WP_084105320.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 366 a.a. Molecular weight: 39140.98 Da Isoelectric Point: 5.2324
>NTDB_id=485083 H2514_RS05130 WP_084105320.1 1153394..1154494(+) (recA) [Lysobacter sp. CW239]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRHKIGQMMPGQSPEVTTGGNALKFYASVRLDIRRIGSVKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGMEAKLVERAGAWYSMGEERIGQGKENARQYLKDNPVLAEQL
EAELRKRLVPVEAAPAAVDGDADDESDEAVKTGKAGKAAKAEKLEA
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRHKIGQMMPGQSPEVTTGGNALKFYASVRLDIRRIGSVKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGMEAKLVERAGAWYSMGEERIGQGKENARQYLKDNPVLAEQL
EAELRKRLVPVEAAPAAVDGDADDESDEAVKTGKAGKAAKAEKLEA
Nucleotide
Download Length: 1101 bp
>NTDB_id=485083 H2514_RS05130 WP_084105320.1 1153394..1154494(+) (recA) [Lysobacter sp. CW239]
ATGGACGAGAACAAGAAGCGCGCTCTTTCCGCGGCTTTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGTTCGGTCATGCG
CATGGGCGATCGCGTGGTCGAAGCCGCCGAAGTGATCGGTACCGGCTCACTGATGCTCGATATCGCCTTGGGCATTGGCG
GCTTGCCCAAGGGACGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACCCTGACCCTGCAGGCGATCGCC
CAGTGCCAGAAGAATGGCGGCACGGCGGCCTTCATCGATGCCGAGCATGCGCTCGACCCGATCTATGCCGCCAAGCTGGG
GGTCAACGTCGACGACCTGCTGCTCTCCCAGCCGGATACCGGCGAGCAGGCCCTGGAAATTGCCGACATGCTGGTGCGTT
CGGCCGCAGTCGACATCGTGGTGATCGACTCGGTCGCCGCACTGACCCCGCGCGCGGAGATCGAAGGTGAGATGGGCGAT
CAGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTGCGGAAGCTGACCGGCAATATCAAGCGGTCCGGCACGCT
GGTGGTGTTCATCAACCAGCTGCGGCACAAGATCGGCCAGATGATGCCGGGCCAGAGCCCCGAGGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGTCGCATCGGTTCCGTCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGGATCAAGGTCGTCAAGAACAAGCTGGCACCGCCGTTCAAGCAGGTGGTCACCGAGATCCTCTATGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGAGATGGGCATGGAAGCCAAGCTGGTCGAGCGCGCAGGCGCCTGGTACAGCA
TGGGCGAGGAGCGGATCGGCCAGGGCAAGGAAAATGCCCGCCAGTACCTGAAGGACAACCCGGTACTCGCCGAGCAACTG
GAAGCGGAGTTGCGCAAGCGGCTGGTGCCTGTTGAAGCGGCCCCTGCTGCGGTGGATGGCGATGCCGATGATGAGTCGGA
CGAGGCTGTCAAAACCGGCAAGGCCGGGAAAGCCGCCAAGGCCGAAAAGCTCGAGGCCTGA
ATGGACGAGAACAAGAAGCGCGCTCTTTCCGCGGCTTTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGTTCGGTCATGCG
CATGGGCGATCGCGTGGTCGAAGCCGCCGAAGTGATCGGTACCGGCTCACTGATGCTCGATATCGCCTTGGGCATTGGCG
GCTTGCCCAAGGGACGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACCCTGACCCTGCAGGCGATCGCC
CAGTGCCAGAAGAATGGCGGCACGGCGGCCTTCATCGATGCCGAGCATGCGCTCGACCCGATCTATGCCGCCAAGCTGGG
GGTCAACGTCGACGACCTGCTGCTCTCCCAGCCGGATACCGGCGAGCAGGCCCTGGAAATTGCCGACATGCTGGTGCGTT
CGGCCGCAGTCGACATCGTGGTGATCGACTCGGTCGCCGCACTGACCCCGCGCGCGGAGATCGAAGGTGAGATGGGCGAT
CAGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTGCGGAAGCTGACCGGCAATATCAAGCGGTCCGGCACGCT
GGTGGTGTTCATCAACCAGCTGCGGCACAAGATCGGCCAGATGATGCCGGGCCAGAGCCCCGAGGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGTCGCATCGGTTCCGTCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGGATCAAGGTCGTCAAGAACAAGCTGGCACCGCCGTTCAAGCAGGTGGTCACCGAGATCCTCTATGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGAGATGGGCATGGAAGCCAAGCTGGTCGAGCGCGCAGGCGCCTGGTACAGCA
TGGGCGAGGAGCGGATCGGCCAGGGCAAGGAAAATGCCCGCCAGTACCTGAAGGACAACCCGGTACTCGCCGAGCAACTG
GAAGCGGAGTTGCGCAAGCGGCTGGTGCCTGTTGAAGCGGCCCCTGCTGCGGTGGATGGCGATGCCGATGATGAGTCGGA
CGAGGCTGTCAAAACCGGCAAGGCCGGGAAAGCCGCCAAGGCCGAAAAGCTCGAGGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.