Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IDM36_RS17205 Genome accession   NZ_CP061801
Coordinates   3605065..3606123 (-) Length   352 a.a.
NCBI ID   WP_182272413.1    Uniprot ID   A0A7T0DUH2
Organism   Enterobacter mori strain HSW1412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3600065..3611123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM36_RS17190 (IDM36_17195) csrA 3601311..3601496 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  IDM36_RS17195 (IDM36_17200) alaS 3601738..3604365 (-) 2628 WP_196390416.1 alanine--tRNA ligase -
  IDM36_RS17200 (IDM36_17205) recX 3604497..3604997 (-) 501 WP_182918831.1 recombination regulator RecX -
  IDM36_RS17205 (IDM36_17210) recA 3605065..3606123 (-) 1059 WP_182272413.1 recombinase RecA Machinery gene
  IDM36_RS17210 (IDM36_17215) pncC 3606213..3606710 (-) 498 WP_182272414.1 nicotinamide-nucleotide amidase -
  IDM36_RS17215 (IDM36_17220) - 3606841..3607719 (-) 879 WP_196390417.1 metal ABC transporter substrate-binding protein -
  IDM36_RS17220 (IDM36_17225) - 3607734..3608594 (-) 861 WP_182272416.1 metal ABC transporter permease -
  IDM36_RS17225 (IDM36_17230) - 3608591..3609244 (-) 654 WP_196390418.1 metal ABC transporter ATP-binding protein -
  IDM36_RS17230 (IDM36_17235) mltB 3609552..3610652 (-) 1101 WP_182918833.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37818.23 Da        Isoelectric Point: 4.8120

>NTDB_id=484758 IDM36_RS17205 WP_182272413.1 3605065..3606123(-) (recA) [Enterobacter mori strain HSW1412]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAIGWLKENPAAAKEI
EKKVRELLLNNQDATPDFAVDSADAEETHEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=484758 IDM36_RS17205 WP_182272413.1 3605065..3606123(-) (recA) [Enterobacter mori strain HSW1412]
ATGGCTATCGACGAGAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCAATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGACATCGCACTGGGTG
CTGGCGGTTTGCCAATGGGCCGTATCGTAGAGATCTACGGACCGGAATCTTCCGGTAAAACCACTCTGACGCTGCAGGTT
ATCGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCATGCGCTGGATCCAATCTATGCCCGCAA
ACTGGGCGTTGATATCGATAACCTGCTGTGTTCTCAACCGGATACCGGTGAACAGGCGCTGGAAATTTGTGATGCGCTGG
CACGCTCCGGTGCCGTTGACGTTATCGTGGTTGACTCCGTTGCCGCACTGACGCCAAAAGCCGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
TACGCTGCTCATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGTGAGAACGTGGTCGGT
AGCGAAACTCGCGTGAAGGTGGTGAAGAACAAAATCGCTGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGATAAGATCGGTCAGGGTAAAGCCAATGCAATTGGCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAAATT
GAGAAGAAAGTGCGTGAGCTTCTGTTGAACAACCAGGACGCCACACCAGACTTCGCAGTTGATAGCGCGGATGCTGAAGA
AACCCACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T0DUH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

94.034

0.798
  recA Vibrio cholerae strain A1552

84.894

94.034

0.798
  recA Pseudomonas stutzeri DSM 10701

73.487

98.58

0.724
  recA Acinetobacter baylyi ADP1

71.347

99.148

0.707
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Glaesserella parasuis strain SC1401

68.661

99.716

0.685
  recA Ralstonia pseudosolanacearum GMI1000

68.563

94.886

0.651
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

91.193

0.554