Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IEE84_RS10630 Genome accession   NZ_CP061739
Coordinates   2545452..2546504 (+) Length   350 a.a.
NCBI ID   WP_101205782.1    Uniprot ID   -
Organism   Psychrobacter sp. 28M-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2540452..2551504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEE84_RS10615 (IEE84_10615) - 2540491..2542377 (+) 1887 WP_191114150.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IEE84_RS10620 (IEE84_10620) - 2542423..2543352 (-) 930 WP_191114151.1 DUF2628 domain-containing protein -
  IEE84_RS10625 (IEE84_10625) trmB 2543554..2544393 (+) 840 WP_191114152.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  IEE84_RS10630 (IEE84_10630) recA 2545452..2546504 (+) 1053 WP_101205782.1 recombinase RecA Machinery gene
  IEE84_RS10635 (IEE84_10635) - 2546545..2547636 (+) 1092 WP_191114153.1 regulatory protein RecX -
  IEE84_RS10640 (IEE84_10640) - 2547810..2548523 (-) 714 WP_102092773.1 YidB family protein -
  IEE84_RS10645 (IEE84_10645) - 2548765..2549223 (-) 459 WP_191114154.1 protein YgfX -
  IEE84_RS10650 (IEE84_10650) - 2549276..2549557 (-) 282 WP_057761419.1 succinate dehydrogenase assembly factor 2 -
  IEE84_RS10655 (IEE84_10655) folP 2549720..2550613 (-) 894 WP_191114155.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37660.95 Da        Isoelectric Point: 4.8780

>NTDB_id=484430 IEE84_RS10630 WP_101205782.1 2545452..2546504(+) (recA) [Psychrobacter sp. 28M-43]
MDDNKAKALKAALGQIEKQFGKNTIMHLGDDSAIMDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGTCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAIDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAQEIE
DKIRDEKLGTKKNSKADETEEAEQASEPVQ

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=484430 IEE84_RS10630 WP_101205782.1 2545452..2546504(+) (recA) [Psychrobacter sp. 28M-43]
ATGGACGACAATAAAGCCAAAGCCCTCAAAGCGGCATTAGGTCAAATCGAAAAGCAATTTGGTAAAAACACCATCATGCA
TCTAGGCGATGACTCGGCCATTATGGATGTCGATGTGGTCTCTACAGGCTCTCTAGGATTAGACATTGCGCTTGGTATTG
GTGGTCTACCAAAAGGCCGTATCGTTGAAATTTACGGTCCAGAAAGCTCAGGTAAGACGACGATGACCCTGCAAGCTATT
GCAGAATGTCAAAAGCAAGGCGGTACCTGTGCCTTTATCGATGCTGAGCATGCGCTTGACCCTGTCTATGCTCGCAAGCT
TGGGGTAAACACTGATGACTTATTGCTTTCTCAGCCTGACAATGGCGAGCAAGCACTTGAAATTACCGATATGTTGGTAC
GCTCAGGTGCAATCGACATGATCGTAATTGACTCAGTAGCTGCATTGACACCACGTGCCGAGATTGAAGGCGAAATGGGC
GACTCGCACATGGGTCTACAAGCGCGCCTAATGAGCCAAGCCCTACGTAAAATCACTGGTAACGCCAAACGCTCTAACTG
TATGGTGGTGTTTATTAACCAGATTCGTATGAAAATTGGTGTTATGTTCGGTAGCCCTGAGACTACGACTGGTGGTAACG
CGCTGAAATTCTACGCCTCTGTACGTATGGATATTCGCCGTATTGGTGCGGTCAAAAACGGTGATGAAATCATCGGTAAC
CAGACCCGTGTCAAAGTTATCAAAAATAAAATGGCACCACCTTTCCGCCAAGCTGAGTTCGAAATTACTTACGGTGAAGG
TACGAATCACTTAGCCGAAGTCATCGACTTAGGTGTGGAGATTGGGGCCGTTGGCAAAGCAGGATCTTGGTACAGTTATG
GCGACGAAAAAATCGGTCAAGGTAAAGCCAACTCTGTGCTTTTCTTAAAAGAGAATCCTGCCATTGCTCAAGAAATCGAA
GACAAGATACGTGACGAAAAGCTTGGTACGAAGAAAAATAGCAAAGCCGATGAAACTGAAGAAGCAGAACAGGCTTCTGA
ACCTGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

77.259

98

0.757
  recA Acinetobacter baumannii D1279779

76.093

98

0.746
  recA Pseudomonas stutzeri DSM 10701

72.141

97.429

0.703
  recA Vibrio cholerae strain A1552

69.591

97.714

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.591

97.714

0.68
  recA Glaesserella parasuis strain SC1401

70.482

94.857

0.669
  recA Ralstonia pseudosolanacearum GMI1000

69.605

94

0.654
  recA Neisseria gonorrhoeae MS11

70.062

92.571

0.649
  recA Neisseria gonorrhoeae MS11

70.062

92.571

0.649
  recA Neisseria gonorrhoeae strain FA1090

70.062

92.571

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.244

98.286

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.09

95.714

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.385

92.857

0.589
  recA Helicobacter pylori strain NCTC11637

63.19

93.143

0.589
  recA Helicobacter pylori 26695

62.883

93.143

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.429

0.566
  recA Streptococcus mutans UA159

56

100

0.56
  recA Streptococcus pneumoniae D39

56.034

99.429

0.557
  recA Streptococcus pneumoniae Rx1

56.034

99.429

0.557
  recA Streptococcus pneumoniae R6

56.034

99.429

0.557
  recA Streptococcus pneumoniae TIGR4

56.034

99.429

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.248

92

0.554
  recA Streptococcus mitis NCTC 12261

58.642

92.571

0.543
  recA Streptococcus mitis SK321

58.333

92.571

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.075

92

0.534
  recA Streptococcus pyogenes NZ131

57.362

93.143

0.534