Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ID616_RS06100 Genome accession   NZ_CP061723
Coordinates   1333843..1334910 (+) Length   355 a.a.
NCBI ID   WP_016485237.1    Uniprot ID   -
Organism   Pseudomonas putida strain ZXPA-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328843..1339910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID616_RS06080 (ID616_06080) fdxA 1328910..1329233 (-) 324 WP_016485233.1 ferredoxin FdxA -
  ID616_RS06085 (ID616_06085) mutS 1329374..1331947 (-) 2574 WP_060519606.1 DNA mismatch repair protein MutS -
  ID616_RS06090 (ID616_06090) - 1332135..1333202 (+) 1068 WP_016485235.1 hypothetical protein -
  ID616_RS06095 (ID616_06095) - 1333257..1333739 (+) 483 WP_191087338.1 CinA family protein -
  ID616_RS06100 (ID616_06100) recA 1333843..1334910 (+) 1068 WP_016485237.1 recombinase RecA Machinery gene
  ID616_RS06105 (ID616_06105) recX 1334931..1335401 (+) 471 WP_016485238.1 recombination regulator RecX -
  ID616_RS06110 (ID616_06110) - 1335696..1336814 (-) 1119 WP_016485239.1 LOG family protein -
  ID616_RS06115 (ID616_06115) - 1336975..1337184 (+) 210 WP_016485240.1 hypothetical protein -
  ID616_RS06120 (ID616_06120) - 1337200..1337619 (-) 420 WP_016485241.1 quorum-sensing-regulated virulence factor family protein -
  ID616_RS06125 (ID616_06125) - 1337880..1338590 (+) 711 WP_016485242.1 tRNA-uridine aminocarboxypropyltransferase -
  ID616_RS06130 (ID616_06130) erdR 1338769..1339419 (+) 651 WP_016485243.1 response regulator transcription factor ErdR -
  ID616_RS06135 (ID616_06135) - 1339493..1339858 (+) 366 WP_016485244.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37500.82 Da        Isoelectric Point: 5.5470

>NTDB_id=484394 ID616_RS06100 WP_016485237.1 1333843..1334910(+) (recA) [Pseudomonas putida strain ZXPA-20]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAGAEASKAAAADASADDVADAEAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=484394 ID616_RS06100 WP_016485237.1 1333843..1334910(+) (recA) [Pseudomonas putida strain ZXPA-20]
ATGGACGACAACAAGAAACGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGTGATCACGAGCGCCAAGGCATTCCTGCCATTTCCACCGGCTCGCTGGGCCTAGATATTGCGCTGGGCATCGGCG
GCCTGCCAAAAGGTCGTATCGTCGAGATCTATGGCCCGGAATCGTCGGGTAAGACCACACTGACGCTGTCGGTTATCGCC
GAAGCCCAGAAGAACGGTGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATTATCGTCGACTCCGTGGCTGCGCTGGTGCCGAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATTCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGTACCGGTGCGGTCAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGTAT
TTACCGTAACGGCGAGATCATCGACTTGGGCGTGTCTCAAGGCCTGGTCGAGAAGTCGGGTGCCTGGTACGCCTACCAGG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAATACCTGGCCGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATCCGTGAAAAGCTGCTGAAAGCCGGTGCGGGTGCTGAAGCCAGCAAGGCTGCCGCCGCTGATGCCAGTGCTGACGA
TGTGGCTGACGCCGAAGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.92

99.155

0.882
  recA Acinetobacter baylyi ADP1

73.143

98.592

0.721
  recA Vibrio cholerae strain A1552

71.264

98.028

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.264

98.028

0.699
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Glaesserella parasuis strain SC1401

69.429

98.592

0.685
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.423

0.563
  recA Streptococcus pyogenes NZ131

56.125

98.873

0.555
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Streptococcus mutans UA159

58.769

91.549

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Streptococcus mitis SK321

58.514

90.986

0.532
  recA Streptococcus mitis NCTC 12261

58.514

90.986

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513