Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICW72_RS20185 Genome accession   NZ_CP061718
Coordinates   4155821..4156858 (+) Length   345 a.a.
NCBI ID   WP_191084302.1    Uniprot ID   -
Organism   Roseococcus microcysteis strain NIBR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4150821..4161858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICW72_RS20150 - 4150986..4151372 (+) 387 WP_191084295.1 flagellar basal body protein -
  ICW72_RS20155 flgC 4151387..4151794 (+) 408 WP_191084296.1 flagellar basal body rod protein FlgC -
  ICW72_RS20160 - 4151794..4152108 (+) 315 WP_191084297.1 flagellar hook-basal body complex protein FliE -
  ICW72_RS20165 - 4152152..4152427 (+) 276 WP_191084298.1 flagellar biosynthetic protein FliQ -
  ICW72_RS20170 - 4152427..4153212 (+) 786 WP_191084299.1 flagellar biosynthetic protein FliR -
  ICW72_RS20175 - 4153216..4154274 (+) 1059 WP_191084300.1 flagellar biosynthesis protein FlhB -
  ICW72_RS20180 - 4154280..4155704 (+) 1425 WP_191084301.1 ATP-binding protein -
  ICW72_RS20185 recA 4155821..4156858 (+) 1038 WP_191084302.1 recombinase RecA Machinery gene
  ICW72_RS20190 - 4156848..4158014 (+) 1167 WP_191084303.1 amidase -
  ICW72_RS20195 - 4158014..4158409 (+) 396 WP_191084304.1 AtzH-like domain-containing protein -
  ICW72_RS20200 - 4158417..4159394 (-) 978 WP_191084305.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36953.35 Da        Isoelectric Point: 5.5085

>NTDB_id=484381 ICW72_RS20185 WP_191084302.1 4155821..4156858(+) (recA) [Roseococcus microcysteis strain NIBR12]
MEKGKALEAALSQIERAFGKGSIMRMGAKTAMEDIEVISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLALHIIAE
AQKKGGTCAFIDAEHALDPGYARKLHVDVDNLLISQPDGGEQALEIADTLVRSGAIDVLVVDSVAALVPKAELEGEMGDT
HVGLHARLMSQALRKLTGTVSRSNCLLIFLNQIRLKIGVMFGNPETTTGGNALKFYSSIRMEIRRIGAIKEREDVIGNQT
RVKVVKNKMAPPFRQVEFDILYGEGISKVGELLDLGVKAGVVEKSGAWFSCDGTRIGQGRENAKQFLRDHPEMADSVERR
IRGQADTVASGMLAAPESDADGDEE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=484381 ICW72_RS20185 WP_191084302.1 4155821..4156858(+) (recA) [Roseococcus microcysteis strain NIBR12]
ATGGAAAAAGGTAAGGCGCTGGAGGCGGCCCTCAGCCAGATCGAGCGCGCCTTCGGCAAGGGCTCCATCATGCGGATGGG
CGCCAAGACGGCGATGGAGGACATCGAGGTCATCTCCACGGGCTCGCTCGGCCTCGATTTGGCGCTGGGCATCGGCGGTG
TGCCCAAGGGGCGCATCATCGAGATCTACGGGCCGGAATCCTCGGGCAAGACCACGCTCGCGCTGCACATCATCGCCGAA
GCCCAGAAGAAGGGCGGCACCTGCGCCTTCATTGACGCCGAGCACGCGCTCGACCCCGGCTATGCGCGCAAGCTGCATGT
GGACGTGGACAACCTGCTCATCAGCCAGCCCGATGGCGGCGAGCAGGCGCTGGAAATCGCGGACACGCTCGTGCGCTCCG
GCGCCATTGACGTGCTGGTGGTGGACAGTGTCGCGGCGCTGGTGCCGAAGGCCGAGCTGGAGGGCGAGATGGGCGACACC
CATGTCGGCCTGCACGCCCGCCTGATGTCCCAGGCGCTGCGGAAGCTGACCGGCACGGTGTCGCGCTCCAACTGCCTGCT
GATCTTCCTGAACCAGATCCGCCTCAAGATCGGCGTGATGTTCGGCAACCCCGAGACCACCACGGGCGGCAACGCGCTGA
AGTTCTACAGCTCCATCCGCATGGAGATCCGCCGCATCGGCGCGATCAAGGAGCGCGAGGACGTCATCGGCAACCAGACC
CGCGTGAAGGTGGTGAAGAACAAGATGGCGCCGCCCTTCCGCCAGGTGGAGTTCGACATCCTCTATGGCGAGGGCATCTC
CAAGGTGGGTGAGCTGCTGGACCTCGGCGTGAAGGCCGGCGTGGTCGAGAAGTCGGGCGCCTGGTTCTCCTGCGACGGCA
CGCGCATCGGCCAGGGGCGCGAGAACGCCAAGCAGTTCCTGCGCGACCACCCCGAGATGGCCGACAGCGTCGAGCGCCGC
ATCCGCGGCCAGGCCGACACGGTGGCGAGCGGCATGCTGGCCGCGCCGGAGAGCGATGCGGACGGCGATGAGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.181

99.42

0.658
  recA Glaesserella parasuis strain SC1401

65.988

99.71

0.658
  recA Acinetobacter baylyi ADP1

67.267

96.522

0.649
  recA Vibrio cholerae strain A1552

64.723

99.42

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.723

99.42

0.643
  recA Acinetobacter baumannii D1279779

64.809

98.841

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.536

93.043

0.638
  recA Neisseria gonorrhoeae MS11

68.536

93.043

0.638
  recA Neisseria gonorrhoeae MS11

68.536

93.043

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.227

89.565

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.905

97.971

0.626
  recA Helicobacter pylori strain NCTC11637

65.839

93.333

0.614
  recA Helicobacter pylori 26695

65.528

93.333

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.615

91.884

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

97.971

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

94.493

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.502

93.043

0.554
  recA Streptococcus mitis NCTC 12261

58.41

94.783

0.554
  recA Streptococcus pneumoniae Rx1

58.41

94.783

0.554
  recA Streptococcus pneumoniae D39

58.41

94.783

0.554
  recA Streptococcus pneumoniae R6

58.41

94.783

0.554
  recA Streptococcus pneumoniae TIGR4

58.41

94.783

0.554
  recA Streptococcus pyogenes NZ131

58.462

94.203

0.551
  recA Streptococcus mitis SK321

58.104

94.783

0.551
  recA Streptococcus mutans UA159

58.104

94.783

0.551
  recA Lactococcus lactis subsp. cremoris KW2

56.923

94.203

0.536