Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IDM46_RS04805 Genome accession   NZ_CP061714
Coordinates   1041917..1043002 (+) Length   361 a.a.
NCBI ID   WP_185114962.1    Uniprot ID   A0A7X0QNJ5
Organism   Luteimonas sp. MC1825     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036917..1048002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM46_RS04790 (IDM46_04790) - 1038842..1039336 (+) 495 WP_185114961.1 CinA family protein -
  IDM46_RS04795 (IDM46_04795) - 1039356..1041038 (+) 1683 WP_185115264.1 AarF/UbiB family protein -
  IDM46_RS04800 (IDM46_04800) lexA 1041089..1041727 (+) 639 WP_182821935.1 transcriptional repressor LexA -
  IDM46_RS04805 (IDM46_04805) recA 1041917..1043002 (+) 1086 WP_185114962.1 recombinase RecA Machinery gene
  IDM46_RS04810 (IDM46_04810) - 1043020..1043541 (+) 522 WP_185114963.1 regulatory protein RecX -
  IDM46_RS04815 (IDM46_04815) alaS 1043703..1046345 (+) 2643 WP_185115265.1 alanine--tRNA ligase -
  IDM46_RS04820 (IDM46_04820) csrA 1046498..1046701 (+) 204 WP_182821928.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39028.90 Da        Isoelectric Point: 5.6272

>NTDB_id=484340 IDM46_RS04805 WP_185114962.1 1041917..1043002(+) (recA) [Luteimonas sp. MC1825]
MDENKKRALSAALGQIEKQFGKGSVIRMGDRVAEVVPVIPTGSLQLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQTIA
ECQKLGGVAAFIDAEHALDPTYAQKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDMVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVFFINQLRHKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGEVIDMAVEAKIIEKAGAWYSYGEERIGQGKENARQYLKENVAVAQRI
EAELRARLAPVAVPAAAVEDADDEVEEAKDKPRSRAKAAEA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=484340 IDM46_RS04805 WP_185114962.1 1041917..1043002(+) (recA) [Luteimonas sp. MC1825]
ATGGACGAGAACAAGAAGCGCGCGCTTTCAGCAGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGATCGGTGATCCG
CATGGGCGACCGCGTCGCCGAAGTGGTCCCGGTCATCCCCACCGGCTCGCTGCAGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCGCGTGGCCGCGTGATCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACCACGCTCACCCTGCAGACCATTGCC
GAGTGCCAGAAGCTCGGCGGCGTGGCGGCGTTCATCGATGCCGAGCACGCCCTTGACCCCACCTACGCGCAGAAGCTCGG
CGTCAACGTCGACGACCTGCTGGTGTCGCAGCCCGACACTGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGCGTT
CCAACGCCGTCGACATGGTGGTGATCGACTCGGTCGCCGCGCTCACCCCGCGCGCCGAGATCGAGGGTGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGTTCTTCATCAACCAGCTGCGCCACAAGATCGGCATCATGATGCCCGGCCAGAGCCCGGAGACCACCACCGGCGGCA
ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTCTACGGCGA
GGGCATCAGCCGCGAGGGCGAGGTGATCGACATGGCGGTCGAGGCCAAGATCATCGAGAAGGCGGGCGCCTGGTACAGCT
ACGGCGAAGAGCGCATCGGCCAGGGCAAGGAGAACGCCCGCCAATACCTCAAGGAGAATGTCGCCGTCGCCCAGCGCATC
GAGGCCGAGCTGCGCGCGCGCCTGGCCCCGGTCGCGGTGCCGGCCGCGGCGGTTGAAGACGCCGACGACGAGGTCGAAGA
AGCCAAGGACAAGCCCAGGTCCCGCGCCAAGGCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0QNJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.289

91.967

0.665
  recA Acinetobacter baylyi ADP1

68.286

96.953

0.662
  recA Pseudomonas stutzeri DSM 10701

69.388

95.014

0.659
  recA Acinetobacter baumannii D1279779

68.314

95.291

0.651
  recA Vibrio cholerae strain A1552

69.512

90.859

0.632
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.512

90.859

0.632
  recA Glaesserella parasuis strain SC1401

64.183

96.676

0.62
  recA Neisseria gonorrhoeae MS11

66.667

90.582

0.604
  recA Neisseria gonorrhoeae strain FA1090

66.667

90.582

0.604
  recA Neisseria gonorrhoeae MS11

66.667

90.582

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.231

96.122

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

60.234

94.737

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

89.197

0.562
  recA Helicobacter pylori strain NCTC11637

62.154

90.028

0.56
  recA Streptococcus mitis SK321

58.261

95.568

0.557
  recA Helicobacter pylori 26695

61.846

90.028

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

92.244

0.557
  recA Streptococcus pneumoniae TIGR4

56.657

97.784

0.554
  recA Streptococcus pneumoniae Rx1

56.657

97.784

0.554
  recA Streptococcus pneumoniae D39

56.657

97.784

0.554
  recA Streptococcus pneumoniae R6

56.657

97.784

0.554
  recA Streptococcus mutans UA159

56.657

97.784

0.554
  recA Streptococcus pyogenes NZ131

56.41

97.23

0.548
  recA Streptococcus mitis NCTC 12261

59.146

90.859

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.663

91.136

0.535
  recA Lactococcus lactis subsp. cremoris KW2

58.896

90.305

0.532