Detailed information NTG0484121

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: J8F87_RS17675
• Genome accession: NZ_CP072564
• Coordinates: 3666014..3668896 (+)
• Length: 960 a.a.
• NCBI ID: WP_000101612.1
• Uniprot ID: -
• Organism: Escherichia coli strain WG5::PA2
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3661014..3673896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8F87_RS17640 (J8F87_17505)	-	3662243..3662730 (+)	488	Protein_3463	IS3 family transposase	-
J8F87_RS17645 (J8F87_17510)	-	3662739..3663926 (-)	1188	Protein_3464	IS256 family transposase	-
J8F87_RS17650 (J8F87_17515)	-	3664144..3664308 (-)	165	Protein_3465	transposase domain-containing protein	-
J8F87_RS17655 (J8F87_17520)	-	3664253..3664516 (-)	264	WP_001247776.1	transposase	-
J8F87_RS17660 (J8F87_17525)	-	3664531..3664794 (+)	264	WP_001295708.1	hypothetical protein	-
J8F87_RS17665 (J8F87_17530)	-	3665023..3665304 (+)	282	WP_000643628.1	helix-turn-helix domain-containing protein	-
J8F87_RS17670 (J8F87_17535)	hsp20	3665339..3665908 (+)	570	WP_000350435.1	small heat shock protein sHSP20	-
J8F87_RS17675 (J8F87_17540)	clpC	3666014..3668896 (+)	2883	WP_000101612.1	heat shock survival AAA family ATPase ClpK	Regulator
J8F87_RS17680 (J8F87_17545)	-	3668896..3669087 (+)	192	WP_001295707.1	hypothetical protein	-
J8F87_RS17685 (J8F87_17550)	-	3669148..3670876 (+)	1729	Protein_3472	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	-
J8F87_RS17690 (J8F87_17555)	hsp20-GI	3670964..3671422 (+)	459	WP_001275372.1	small heat shock protein sHSP20-GI	-
J8F87_RS17695 (J8F87_17560)	yfdX1	3671445..3672359 (+)	915	WP_001022485.1	heat resistance protein YfdX1	-
J8F87_RS17700 (J8F87_17565)	yfdX2	3672462..3673349 (+)	888	WP_081508864.1	heat resistance protein YfdX2	-

Sequence

Protein

• Length: 960 a.a.
• Molecular weight: 105563.39 Da
• Isoelectric Point: 5.7134

>NTDB_id=484121 J8F87_RS17675 WP_000101612.1 3666014..3668896(+) (clpC) [Escherichia coli strain WG5::PA2]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDATPVAA
DTDDVVDASFGEPAAAGSGAPRRRGSGLASRISEQSEALLQEAAKHAAEFGRSEVDTEHLLLALADSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMARDGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVTVPEPTVAQTIMILRGLRDTFEAHHKVSISEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVAARKQYDQAAELGKRIEAKEAELKK
LVENWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEHALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAADEEYEKTKAEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARSAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHASARWDDKAERVVFERKEPLQTPAEPEQPDAAKATEPEQPDAAKATETPHGDAGKGSRKKKSASDAS

Nucleotide

• Length: 2883 bp

>NTDB_id=484121 J8F87_RS17675 WP_000101612.1 3666014..3668896(+) (clpC) [Escherichia coli strain WG5::PA2]
ATGGCCAGAAAACAATGCCAGGTTTGCGGCCAACCCGCTACCGTGCGGGTGGAAGCCAATCTCAACGGTCGTCACAGCAC
CATGCTGTTGTGCGACGACCATTACCGGCAATTAGTGCGCCAGCAAAAGCGCACCGTTTCGCCGCTGGAAGCCTTGTTCG
GTTCGCGCAGCGGCCTGTTCGAGGACTTCCTCGGCAGTGACTTCTTCCGCATCGGCGACGACGCGACGCCAGTTGCCGCC
GATACCGATGACGTGGTCGATGCCTCGTTTGGCGAGCCCGCCGCCGCAGGTTCGGGTGCGCCGCGCCGTCGCGGCAGTGG
GCTGGCCAGCCGCATCAGCGAACAGTCGGAAGCCTTGTTGCAGGAGGCCGCCAAACACGCTGCCGAATTTGGCCGCTCCG
AGGTGGATACCGAACATCTGCTGCTGGCGCTGGCCGACAGCGACGTGGTCAAGACCATCCTGGGTCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGGCAGATCGAGTCTGAGGCCAAGCGCGGGGACAAGCCCTTCGAGGGCGAGATCGGCGTGTCGCC
GCGCGTGAAGGATGCGCTCAGCCGCGCCTTCGTGGCCTCCAATGAACTCGGCCATTCTTATGTCGGTCCAGAGCATTTCC
TGATTGGTCTGGCCGAGGAAGGCGAAGGGCTGGCCGCCAACCTGCTGCGCCGCTACGGCCTGACGCCGCAGGCGCTGCGC
CAACAGGTCAGCAAGGTGGTCGGCAAGGGCGCCGAGGATGGACGCGCTGAGACGCCGACCAACACGCCAGAACTCGACAA
GTACTCGCGCGACCTGACCAAGATGGCGCGCGACGGCAAGCTCGACCCGGTGATCGGCCGCGCGCAGGAGATCGAAACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTGGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTGGCGGGTGAAGTGCCCGAGACCTTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAATATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTGAAGGAGGTGACCGAGCACC
AGGGCGAGCTGATTTTGTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGCGGTGGCGAAGGCGGGCTGGAC
GTGGCCAACGTATTCAAACCGATGATGGCGCGCGGTGAACTCAACCTGATCGGCGCCACGACGCTGAACGAGTACCAGAA
ATACATCGAGAAGGATGCCGCACTGGAGCGGCGCTTCCAGCCGGTGACGGTGCCCGAGCCGACGGTGGCCCAGACCATCA
TGATTCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCTCCGAGGACGCGATCATCGCGGCGGCC
GAGTTGTCCGACCGCTACATCACGGCGCGCTTCCTGCCGGACAAGGCGATCGACCTGCTCGACCAGGCGGCCGCGCGCGT
GAAGCTGTCGGCCACGGCCCGGCCGGTGGCCGTGCAGGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAACAGGATT
ACGTGGCCGCGCGCAAGCAGTACGACCAGGCCGCCGAGCTCGGCAAGCGCATCGAAGCCAAGGAGGCCGAGCTCAAGAAG
CTCGTCGAGAACTGGGAGCGGGAGCGGGCCTCCGGCAGTGCAGAGGTCAAGGCGGAACACGTGGCGCAGATCGTCTCGCG
CCTGACCGGCATCCCGGTCAACGAGTTGACGGTGGAAGAGCGCGAAAAGCTGCTGCACTTGGAACAACGGCTGCACGAGC
GCCTGGTGGGACAAGACGAGGCGGTCCGTGCCGTGGCCGATGCCGTGCGGCTGTCCCGCGCCGGCCTGCGCGAAGGCAGC
AAACCGGTGGCTACCTTCCTGTTTCTGGGCCCGACCGGGGTGGGCAAGACCGAGCTCGCCAAGGCATTGGCCGAATCGAT
CTACGGCGATGAGCACGCCCTGTTGCGCATCGACATGTCGGAATATGGCGAACGCCATACCGTGGCGCGGCTGGTGGGCG
CGCCTCCGGGCTATGTCGGTTACGACGAAGGCGGTCAGCTCACCGAGAAGGTGCGGCGCAAGCCCTACAGCGTGCTGCTG
CTCGACGAGATCGAGAAGGCACACCCTGACGTCTACAACATCCTGTTGCAAGTGTTCGACGACGGTCGCCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAACACCATCATCATCGCCACGTCCAACCTGGGTTCGGACATCATCCAGCGACGGC
TGAAGGCGCGTGGGGCGGCCGACGAGGAGTACGAAAAGACCAAGGCCGAGGTCATGGACGTGCTGCGCGGCCACTTCCGG
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGTAAGGAGGAGATCCGCCACATCGTCGGCCT
GCAGCTCGATCGCGTGGCGCGCAGCGCCGCCAGCCAGGGCGTGACGCTCACTTTCGATCAGACGCTGATCGACCATTTCG
CGGAAGAAGGCTACAAACCCGAGTTCGGTGCGCGTGAACTCAAGCGCCTGATCCGCAGCGAGCTGGAAACTGCGCTGGCG
CGCGAGATGCTCGGTGGCGGCATCGGCAAGGGCGATCACGCCAGCGCACGCTGGGACGACAAGGCCGAACGCGTGGTGTT
CGAACGCAAAGAGCCACTGCAGACCCCGGCCGAGCCGGAGCAGCCGGATGCCGCGAAGGCGACCGAGCCGGAGCAGCCGG
ATGCCGCGAAGGCGACCGAGACGCCGCACGGCGACGCTGGCAAAGGCTCGCGCAAGAAGAAGTCGGCGAGCGACGCATCT
TGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (307-428)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.569	82.396	0.417
clpC	Streptococcus thermophilus LMD-9	42.581	86.354	0.368
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.28	84.479	0.366
clpC	Streptococcus thermophilus LMG 18311	42.494	86.042	0.366