Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IC769_RS07845 Genome accession   NZ_CP061672
Coordinates   1667127..1668179 (-) Length   350 a.a.
NCBI ID   WP_191109321.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1662127..1673179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS07810 (IC769_07810) - 1662364..1662867 (+) 504 WP_191109318.1 OmpH family outer membrane protein -
  IC769_RS07815 (IC769_07815) lpxD 1662872..1663942 (+) 1071 WP_191109319.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IC769_RS07820 (IC769_07820) fabZ 1663949..1664434 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IC769_RS07825 (IC769_07825) lpxA 1664431..1665219 (+) 789 WP_004701211.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  IC769_RS07830 (IC769_07830) - 1665273..1666163 (-) 891 WP_191109320.1 YbgF trimerization domain-containing protein -
  IC769_RS07840 (IC769_07840) - 1666591..1667073 (-) 483 WP_019458742.1 regulatory protein RecX -
  IC769_RS07845 (IC769_07845) recA 1667127..1668179 (-) 1053 WP_191109321.1 recombinase RecA Machinery gene
  IC769_RS07850 (IC769_07850) - 1668325..1668764 (-) 440 Protein_1534 RNA-binding S4 domain-containing protein -
  IC769_RS07855 (IC769_07855) - 1668748..1669434 (-) 687 WP_004701221.1 HAD-IA family hydrolase -
  IC769_RS07860 (IC769_07860) - 1669851..1670141 (+) 291 WP_004701224.1 hypothetical protein -
  IC769_RS07865 (IC769_07865) - 1670205..1670729 (-) 525 WP_004701226.1 GNAT family N-acetyltransferase -
  IC769_RS07870 (IC769_07870) gigD 1670772..1671221 (-) 450 WP_004701228.1 Lrp/AsnC family transcriptional regulator GigD -
  IC769_RS07875 (IC769_07875) kynU 1671368..1672618 (+) 1251 WP_191109322.1 kynureninase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38017.37 Da        Isoelectric Point: 4.7853

>NTDB_id=484006 IC769_RS07845 WP_191109321.1 1667127..1668179(-) (recA) [Acinetobacter seifertii strain AS23]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENKQIAEEIER
NIREQLLTTGTNGAVQVEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=484006 IC769_RS07845 WP_191109321.1 1667127..1668179(-) (recA) [Acinetobacter seifertii strain AS23]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAAATTGAAAAGCAATTTGGCAAAAATACGGTTATGCG
TCTCGGCGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGCG
GTTTACCAAAAGGTCGTATTGTTGAGATTTATGGTCCTGAATCTTCTGGTAAAACTACAATGACATTACAAGCAATTGCG
CAATGTCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCTGAGCACGCATTAGACCCTCAATATGCACGTAAGCTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAACGGTGAGCAAGCACTTGAAATCGCAGATATGCTTGTTCGTT
CAGGTGCGATTGATTTAATCGTTGTGGACTCGGTAGCTGCCCTTACACCTAAAGCAGAGATCGAAGGTGAGATGGGTGAC
TCTCACATGGGTCTACAAGCTCGTCTTATGAGCCAAGCGCTTCGTAAAATTACGGGTAACGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACAACTGGTGGTAATGCTC
TTAAGTTCTATGCGTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGACGAAATCGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAGAGAAGCTATTTTCCAAATCCTATACGGCAAAGGCAC
TAACCAACTTGGTGAACTTGTAGATTTGGCAGTTCAACAAGATATCGTTCAAAAAGCTGGTGCATGGTATTCATATCAAG
GTAATAAAATTGGCCAAGGTAAGAATAACGTGATTCGTTATTTTGAAGAAAATAAGCAAATCGCTGAAGAGATTGAACGC
AATATTCGAGAGCAATTGCTGACCACAGGTACAAATGGCGCAGTACAAGTTGAAGATGACGAAGAAGAGCCAGATCTATT
ATTAGAATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.286

100

0.983
  recA Acinetobacter baylyi ADP1

93.372

99.143

0.926
  recA Pseudomonas stutzeri DSM 10701

74.063

99.143

0.734
  recA Vibrio cholerae strain A1552

73.7

93.429

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.429

0.689
  recA Glaesserella parasuis strain SC1401

72.222

92.571

0.669
  recA Ralstonia pseudosolanacearum GMI1000

71.037

93.714

0.666
  recA Neisseria gonorrhoeae MS11

66.097

100

0.663
  recA Neisseria gonorrhoeae MS11

66.097

100

0.663
  recA Neisseria gonorrhoeae strain FA1090

66.097

100

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.571

0.62
  recA Helicobacter pylori strain NCTC11637

62.865

97.714

0.614
  recA Helicobacter pylori 26695

62.573

97.714

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.571

0.603
  recA Streptococcus pneumoniae R6

59.538

98.857

0.589
  recA Streptococcus pneumoniae D39

59.538

98.857

0.589
  recA Streptococcus pneumoniae TIGR4

59.538

98.857

0.589
  recA Streptococcus pneumoniae Rx1

59.538

98.857

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.143

0.586
  recA Streptococcus mitis SK321

59.238

97.429

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92

0.577
  recA Streptococcus mutans UA159

61.585

93.714

0.577
  recA Streptococcus mitis NCTC 12261

61.35

93.143

0.571
  recA Streptococcus pyogenes NZ131

61.538

92.857

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.286

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.714

0.537