Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   IC780_RS11130 Genome accession   NZ_CP061629
Coordinates   2332340..2333392 (+) Length   350 a.a.
NCBI ID   WP_190977666.1    Uniprot ID   A0A7H2W9F8
Organism   Acinetobacter seifertii strain AS47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2327340..2338392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC780_RS11100 (IC780_11095) kynU 2327900..2329150 (-) 1251 WP_077169221.1 kynureninase -
  IC780_RS11105 (IC780_11100) gigD 2329297..2329746 (+) 450 WP_077169222.1 Lrp/AsnC family transcriptional regulator GigD -
  IC780_RS11110 (IC780_11105) - 2329789..2330313 (+) 525 WP_019458744.1 GNAT family N-acetyltransferase -
  IC780_RS11115 (IC780_11110) - 2330377..2330667 (-) 291 WP_004701224.1 hypothetical protein -
  IC780_RS11120 (IC780_11115) - 2331084..2331770 (+) 687 WP_004701221.1 HAD-IA family hydrolase -
  IC780_RS11125 (IC780_11120) - 2331754..2332194 (+) 441 WP_077169223.1 RNA-binding S4 domain-containing protein -
  IC780_RS11130 (IC780_11125) recA 2332340..2333392 (+) 1053 WP_190977666.1 recombinase RecA Machinery gene
  IC780_RS11135 (IC780_11130) - 2333446..2333928 (+) 483 WP_019458742.1 regulatory protein RecX -
  IC780_RS11145 (IC780_11140) - 2334356..2335246 (+) 891 WP_068933697.1 YbgF trimerization domain-containing protein -
  IC780_RS11150 (IC780_11145) lpxA 2335299..2336087 (-) 789 WP_077169224.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  IC780_RS11155 (IC780_11150) fabZ 2336084..2336569 (-) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IC780_RS11160 (IC780_11155) lpxD 2336576..2337646 (-) 1071 WP_004701209.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IC780_RS11165 (IC780_11160) - 2337651..2338154 (-) 504 WP_004701206.1 OmpH family outer membrane protein -

Sequence


Protein


Download         Length: 350 a.a.        Molecular weight: 38079.45 Da        Isoelectric Point: 4.7853

>NTDB_id=483695 IC780_RS11130 WP_190977666.1 2332340..2333392(+) (recA) [Acinetobacter seifertii strain AS47]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNMIRYFEENKQIAEEIER
NIREQLLTTGTNGAVQVEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=483695 IC780_RS11130 WP_190977666.1 2332340..2333392(+) (recA) [Acinetobacter seifertii strain AS47]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAAATTGAAAAGCAATTTGGCAAAAATACGGTTATGCG
TCTCGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATCGCC
CAATGTCAAAAGTCTGGTGGTACATGTGCATTCATCGATGCCGAACATGCCCTAGATCCTCAATATGCACGTAAACTTGG
TGTAGATATTGACAACCTACTTGTTTCACAACCTGATAATGGTGAACAAGCACTTGAAATCGCCGATATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACACCTAAAGCAGAGATCGAAGGTGAGATGGGTGAT
TCTCACATGGGTCTACAAGCACGCCTTATGAGCCAAGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAGCCCAGAAACTACAACGGGTGGTAACGCTC
TTAAGTTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATTGGTCAAGTAAAAGAAGGCGACGAAATCGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAGAGAAGCTATTTTCCAAATCCTATACGGCAAAGGCAC
TAACCAACTTGGTGAACTTGTAGATTTGGCAGTTCAACAAGATATCGTTCAAAAAGCTGGTGCATGGTATTCATATCAAG
GTAATAAAATTGGCCAAGGTAAGAATAACATGATTCGTTATTTTGAAGAAAATAAGCAAATCGCTGAAGAGATTGAACGC
AATATTCGAGAGCAATTGCTGACCACTGGTACAAATGGTGCAGTACAAGTTGAAGATGACGAAGAAGAGCCAGATCTTTT
ATTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7H2W9F8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.571

100

0.986

  recA Acinetobacter baylyi ADP1

92.507

99.143

0.917

  recA Pseudomonas stutzeri DSM 10701

73.775

99.143

0.731

  recA Vibrio cholerae strain A1552

73.394

93.429

0.686

  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.429

0.686

  recA Glaesserella parasuis strain SC1401

71.914

92.571

0.666

  recA Ralstonia pseudosolanacearum GMI1000

70.732

93.714

0.663

  recA Neisseria gonorrhoeae MS11

65.527

100

0.657

  recA Neisseria gonorrhoeae MS11

65.527

100

0.657

  recA Neisseria gonorrhoeae strain FA1090

65.527

100

0.657

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.571

0.62

  recA Helicobacter pylori strain NCTC11637

63.158

97.714

0.617

  recA Helicobacter pylori 26695

62.865

97.714

0.614

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

94.571

0.597

  recA Streptococcus pneumoniae R6

59.827

98.857

0.591

  recA Streptococcus pneumoniae D39

59.827

98.857

0.591

  recA Streptococcus pneumoniae TIGR4

59.827

98.857

0.591

  recA Streptococcus pneumoniae Rx1

59.827

98.857

0.591

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.143

0.583

  recA Streptococcus mitis SK321

59.531

97.429

0.58

  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92

0.58

  recA Streptococcus pyogenes NZ131

61.846

92.857

0.574

  recA Streptococcus mitis NCTC 12261

61.656

93.143

0.574

  recA Streptococcus mutans UA159

61.28

93.714

0.574

  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54

  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534