Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IC783_RS08910 Genome accession   NZ_CP061613
Coordinates   1809842..1810894 (-) Length   350 a.a.
NCBI ID   WP_190980422.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1804842..1815894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC783_RS08875 (IC783_08875) - 1805080..1805583 (+) 504 WP_004701206.1 OmpH family outer membrane protein -
  IC783_RS08880 (IC783_08880) lpxD 1805588..1806658 (+) 1071 WP_004701209.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IC783_RS08885 (IC783_08885) fabZ 1806665..1807150 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IC783_RS08890 (IC783_08890) lpxA 1807147..1807935 (+) 789 WP_077169224.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  IC783_RS08895 (IC783_08895) - 1807988..1808878 (-) 891 WP_068933697.1 YbgF trimerization domain-containing protein -
  IC783_RS08905 (IC783_08905) - 1809306..1809788 (-) 483 WP_019458742.1 regulatory protein RecX -
  IC783_RS08910 (IC783_08910) recA 1809842..1810894 (-) 1053 WP_190980422.1 recombinase RecA Machinery gene
  IC783_RS08915 (IC783_08915) - 1811040..1811480 (-) 441 WP_077169223.1 RNA-binding S4 domain-containing protein -
  IC783_RS08920 (IC783_08920) - 1811464..1812150 (-) 687 WP_004701221.1 HAD-IA family hydrolase -
  IC783_RS08925 (IC783_08925) - 1812567..1812857 (+) 291 WP_004701224.1 hypothetical protein -
  IC783_RS08930 (IC783_08930) - 1812921..1813445 (-) 525 WP_019458744.1 GNAT family N-acetyltransferase -
  IC783_RS08935 (IC783_08935) gigD 1813488..1813937 (-) 450 WP_077169222.1 Lrp/AsnC family transcriptional regulator GigD -
  IC783_RS08940 (IC783_08940) kynU 1814084..1815334 (+) 1251 WP_077169221.1 kynureninase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38026.40 Da        Isoelectric Point: 4.7168

>NTDB_id=483558 IC783_RS08910 WP_190980422.1 1809842..1810894(-) (recA) [Acinetobacter seifertii strain AS51]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYACKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNMIRYFEENKQIAEEIER
NIREQLLTTGTNGAVQVEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=483558 IC783_RS08910 WP_190980422.1 1809842..1810894(-) (recA) [Acinetobacter seifertii strain AS51]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAAATTGAAAAGCAATTTGGCAAAAATACGGTTATGCG
TCTCGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATCGCC
CAATGTCAAAAGTCTGGTGGTACATGTGCATTCATCGATGCCGAACATGCCCTAGATCCTCAATATGCATGTAAACTTGG
TGTAGATATTGACAACCTACTTGTTTCACAACCTGATAATGGTGAACAAGCACTTGAAATCGCCGATATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACACCTAAAGCAGAGATCGAAGGTGAGATGGGTGAT
TCTCACATGGGTCTACAAGCACGCCTTATGAGCCAAGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAGCCCAGAAACTACAACGGGTGGTAACGCTC
TTAAGTTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATTGGTCAAGTAAAAGAAGGCGACGAAATCGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAGAGAAGCTATTTTCCAAATCCTATACGGCAAAGGCAC
TAACCAACTTGGTGAACTTGTAGATTTGGCAGTTCAACAAGATATCGTTCAAAAAGCTGGTGCATGGTATTCATATCAAG
GTAATAAAATTGGCCAAGGTAAGAATAACATGATTCGTTATTTTGAAGAAAATAAGCAAATCGCTGAAGAGATTGAACGC
AATATTCGAGAGCAATTGCTGACCACTGGTACAAATGGTGCAGTACAAGTTGAAGATGACGAAGAAGAGCCAGATCTTTT
ATTAGAATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.286

100

0.983
  recA Acinetobacter baylyi ADP1

92.219

99.143

0.914
  recA Pseudomonas stutzeri DSM 10701

73.775

99.143

0.731
  recA Vibrio cholerae strain A1552

73.394

93.429

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.429

0.686
  recA Ralstonia pseudosolanacearum GMI1000

70.732

93.714

0.663
  recA Glaesserella parasuis strain SC1401

71.605

92.571

0.663
  recA Neisseria gonorrhoeae MS11

65.242

100

0.654
  recA Neisseria gonorrhoeae MS11

65.242

100

0.654
  recA Neisseria gonorrhoeae strain FA1090

65.242

100

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.571

0.62
  recA Helicobacter pylori strain NCTC11637

63.158

97.714

0.617
  recA Helicobacter pylori 26695

62.865

97.714

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

94.571

0.597
  recA Streptococcus pneumoniae D39

59.827

98.857

0.591
  recA Streptococcus pneumoniae Rx1

59.827

98.857

0.591
  recA Streptococcus pneumoniae R6

59.827

98.857

0.591
  recA Streptococcus pneumoniae TIGR4

59.827

98.857

0.591
  recA Streptococcus mitis SK321

59.531

97.429

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

93.143

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92

0.58
  recA Streptococcus pyogenes NZ131

61.846

92.857

0.574
  recA Streptococcus mitis NCTC 12261

61.656

93.143

0.574
  recA Streptococcus mutans UA159

61.28

93.714

0.574
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534