Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   IC800_RS07775 Genome accession   NZ_CP061543
Coordinates   1653661..1654713 (-) Length   350 a.a.
NCBI ID   WP_004701217.1    Uniprot ID   N8S6Y7
Organism   Acinetobacter seifertii strain AS80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1648661..1659713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS07740 (IC800_07740) - 1648892..1649395 (+) 504 WP_004701206.1 OmpH family outer membrane protein -
  IC800_RS07745 (IC800_07745) lpxD 1649400..1650470 (+) 1071 WP_191110312.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IC800_RS07750 (IC800_07750) fabZ 1650477..1650962 (+) 486 WP_191107833.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IC800_RS07755 (IC800_07755) lpxA 1650959..1651747 (+) 789 WP_151683374.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  IC800_RS07760 (IC800_07760) - 1651803..1652697 (-) 895 Protein_1514 YbgF trimerization domain-containing protein -
  IC800_RS07770 (IC800_07770) - 1653125..1653607 (-) 483 WP_191107835.1 regulatory protein RecX -
  IC800_RS07775 (IC800_07775) recA 1653661..1654713 (-) 1053 WP_004701217.1 recombinase RecA Machinery gene
  IC800_RS07780 (IC800_07780) - 1654859..1655298 (-) 440 Protein_1517 RNA-binding S4 domain-containing protein -
  IC800_RS07785 (IC800_07785) - 1655282..1655973 (-) 692 Protein_1518 HAD-IA family hydrolase -
  IC800_RS07790 (IC800_07790) - 1656389..1656679 (+) 291 WP_004701224.1 hypothetical protein -
  IC800_RS07795 (IC800_07795) - 1656743..1657267 (-) 525 WP_019458744.1 GNAT family N-acetyltransferase -
  IC800_RS07800 (IC800_07800) gigD 1657311..1657760 (-) 450 WP_191107836.1 Lrp/AsnC family transcriptional regulator GigD -
  IC800_RS07805 (IC800_07805) kynU 1657907..1659157 (+) 1251 WP_191107837.1 kynureninase -

Sequence


Protein


Download         Length: 350 a.a.        Molecular weight: 38047.39 Da        Isoelectric Point: 4.7853

>NTDB_id=483038 IC800_RS07775 WP_004701217.1 1653661..1654713(-) (recA) [Acinetobacter seifertii strain AS80]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENKQIAEEIER
NIREQLLTTGTNGAVQVEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=483038 IC800_RS07775 WP_004701217.1 1653661..1654713(-) (recA) [Acinetobacter seifertii strain AS80]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAGATTGAAAAGCAATTTGGCAAAAATACGGTTATGCG
TCTCGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATCGCC
CAATGTCAAAAGTCTGGTGGTACATGTGCATTCATCGATGCCGAACATGCCTTAGATCCTCAATATGCACGTAAACTTGG
TGTAGATATTGACAACCTACTTGTTTCACAACCTGATAATGGTGAACAAGCACTTGAAATCGCCGATATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCCCTTACACCTAAAGCAGAGATCGAAGGTGAGATGGGTGAT
TCTCACATGGGTCTACAAGCTCGTCTTATGAGCCAAGCGCTTCGTAAAATTACGGGTAACGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACAACTGGTGGTAACGCTC
TTAAATTCTACGCGTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGACGAAATCGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAGAGAAGCTATTTTCCAAATCCTATACGGCAAAGGTAC
CAACCAACTTGGTGAACTTGTAGATTTGGCAGTTCAACAAGATATCGTTCAAAAAGCTGGTGCATGGTATTCATATCAAG
GTAATAAAATTGGCCAAGGTAAGAATAACGTGATTCGTTATTTTGAAGAAAATAAGCAAATCGCTGAAGAGATTGAGCGC
AATATTCGAGAGCAATTGCTGACCACAGGTACAAATGGCGCAGTACAAGTTGAAGATGACGAAGAAGAGCCAGATCTATT
ATTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N8S6Y7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.857

100

0.989

  recA Acinetobacter baylyi ADP1

92.795

99.143

0.92

  recA Pseudomonas stutzeri DSM 10701

73.775

99.143

0.731

  recA Vibrio cholerae strain A1552

73.394

93.429

0.686

  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.429

0.686

  recA Glaesserella parasuis strain SC1401

71.914

92.571

0.666

  recA Ralstonia pseudosolanacearum GMI1000

70.732

93.714

0.663

  recA Neisseria gonorrhoeae MS11

65.812

100

0.66

  recA Neisseria gonorrhoeae MS11

65.812

100

0.66

  recA Neisseria gonorrhoeae strain FA1090

65.812

100

0.66

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.571

0.62

  recA Helicobacter pylori strain NCTC11637

63.158

97.714

0.617

  recA Helicobacter pylori 26695

62.865

97.714

0.614

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

94.571

0.6

  recA Streptococcus pneumoniae R6

59.827

98.857

0.591

  recA Streptococcus pneumoniae D39

59.827

98.857

0.591

  recA Streptococcus pneumoniae TIGR4

59.827

98.857

0.591

  recA Streptococcus pneumoniae Rx1

59.827

98.857

0.591

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.143

0.583

  recA Streptococcus mitis SK321

59.531

97.429

0.58

  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92

0.58

  recA Streptococcus pyogenes NZ131

61.846

92.857

0.574

  recA Streptococcus mitis NCTC 12261

61.656

93.143

0.574

  recA Streptococcus mutans UA159

61.28

93.714

0.574

  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54

  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534