Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IC758_RS06560 Genome accession   NZ_CP061361
Coordinates   1345419..1346465 (+) Length   348 a.a.
NCBI ID   WP_227434237.1    Uniprot ID   -
Organism   Clostridioides sp. ES-W-0016-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1340419..1351465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC758_RS06545 (IC758_06530) mnmH 1342214..1343272 (+) 1059 WP_227434234.1 tRNA 2-selenouridine(34) synthase MnmH -
  IC758_RS06550 (IC758_06535) rimO 1343266..1344600 (+) 1335 WP_227860827.1 30S ribosomal protein S12 methylthiotransferase RimO -
  IC758_RS06555 (IC758_06540) pgsA 1344587..1345129 (+) 543 WP_227434236.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IC758_RS06560 (IC758_06545) recA 1345419..1346465 (+) 1047 WP_227434237.1 recombinase RecA Machinery gene
  IC758_RS06565 (IC758_06550) rny 1346641..1348182 (+) 1542 WP_227434331.1 ribonuclease Y -
  IC758_RS06570 (IC758_06555) - 1348508..1350301 (+) 1794 WP_227860828.1 sensor histidine kinase -
  IC758_RS06575 (IC758_06560) - 1350306..1351112 (+) 807 WP_227823666.1 response regulator -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37397.82 Da        Isoelectric Point: 4.8818

>NTDB_id=482088 IC758_RS06560 WP_227434237.1 1345419..1346465(+) (recA) [Clostridioides sp. ES-W-0016-02]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEIYGPESSGKTTVALSC
VASAQKNGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQSEFDIMYGEGISKIGDLLDIAADIDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNMDLTNEI
DEKVRTFYNLNEVSEEAGTLVSEEVVEK

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=482088 IC758_RS06560 WP_227434237.1 1345419..1346465(+) (recA) [Clostridioides sp. ES-W-0016-02]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACGTCTATGTCTATAGATGTTATATCAACAGGAGCAATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAATATATGGTCCTGAATCTTCTGGTAAGACGACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAAATGGAGGAATAGCTGCATTTATAGATGCTGAACATGCGCTTGACCCAGTATATGCAAAAGC
ATTGGGTGTGGATGTTGATAATCTAATCATATCTCAACCAGATACAGGAGAGCAAGCCTTAGAAATAGCAGAGGCATTAA
TAAGAAGTGGTGCAATTGATATAATAGTAATAGATTCAGTTGCAGCATTGGTTCCAAAAGCAGAAATAGACGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCTCAAGCACTTAGAAAATTAACTGGTTCGATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAATTAAGAGAGAAAGTAGGAATAATGTTTGGAAATCCAGAAACGACTACTGGAGGAC
GTGCATTAAAGTTCTATTCATCTGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGACAAGGTTATAGGA
AGCAGAACAAGAGTTAAGGTTGTTAAAAACAAAGTAGCACCACCATTTAAACAATCTGAATTTGATATAATGTATGGAGA
AGGTATATCAAAAATTGGAGATCTTTTAGATATAGCTGCTGACATAGATATAGTTAAAAAATCAGGCTCATGGTATAGTT
ACAATGACACTAAACTTGGACAAGGAAGAGAAAATGTAAAAAAATTCCTAGAGGATAATATGGATTTAACTAATGAAATA
GATGAAAAAGTTAGAACATTTTACAATTTAAATGAGGTTAGTGAAGAAGCCGGTACTTTGGTATCAGAAGAAGTTGTTGA
AAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

66.185

99.425

0.658
  recA Streptococcus mutans UA159

67.976

95.115

0.647
  recA Streptococcus pneumoniae R6

66.568

97.126

0.647
  recA Streptococcus pneumoniae TIGR4

66.568

97.126

0.647
  recA Streptococcus pneumoniae Rx1

66.568

97.126

0.647
  recA Streptococcus pneumoniae D39

66.568

97.126

0.647
  recA Streptococcus mitis NCTC 12261

68.085

94.54

0.644
  recA Bacillus subtilis subsp. subtilis str. 168

68.944

92.529

0.638
  recA Lactococcus lactis subsp. cremoris KW2

65.476

96.552

0.632
  recA Streptococcus pyogenes NZ131

66.972

93.966

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.758

94.828

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

64.955

95.115

0.618
  recA Pseudomonas stutzeri DSM 10701

60.87

99.138

0.603
  recA Ralstonia pseudosolanacearum GMI1000

63.636

94.828

0.603
  recA Neisseria gonorrhoeae MS11

66.987

89.655

0.601
  recA Neisseria gonorrhoeae MS11

66.987

89.655

0.601
  recA Neisseria gonorrhoeae strain FA1090

66.987

89.655

0.601
  recA Acinetobacter baylyi ADP1

64.087

92.816

0.595
  recA Glaesserella parasuis strain SC1401

64.286

92.529

0.595
  recA Helicobacter pylori strain NCTC11637

62.162

95.69

0.595
  recA Helicobacter pylori 26695

62.162

95.69

0.595
  recA Acinetobacter baumannii D1279779

63.777

92.816

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.077

93.391

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

92.816

0.583
  recA Vibrio cholerae strain A1552

62.848

92.816

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.241

0.563