Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICI50_RS07405 Genome accession   NZ_CP061341
Coordinates   1501332..1502441 (-) Length   369 a.a.
NCBI ID   WP_056941239.1    Uniprot ID   -
Organism   Lactobacillus kefiranofaciens strain 1207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496332..1507441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICI50_RS07390 (ICI50_07385) - 1497628..1498290 (+) 663 WP_013854463.1 YigZ family protein -
  ICI50_RS07395 (ICI50_07390) - 1498316..1499476 (-) 1161 WP_013854464.1 MraY family glycosyltransferase -
  ICI50_RS07400 (ICI50_07395) rny 1499579..1501213 (-) 1635 WP_188891413.1 ribonuclease Y -
  ICI50_RS07405 (ICI50_07400) recA 1501332..1502441 (-) 1110 WP_056941239.1 recombinase RecA Machinery gene
  ICI50_RS07410 (ICI50_07405) pgsA 1502630..1503190 (-) 561 WP_013854467.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ICI50_RS07415 (ICI50_07410) - 1503213..1504340 (-) 1128 WP_054640378.1 helix-turn-helix domain-containing protein -
  ICI50_RS07420 (ICI50_07415) - 1504408..1505136 (-) 729 WP_013854469.1 SDR family NAD(P)-dependent oxidoreductase -
  ICI50_RS07425 (ICI50_07420) - 1505142..1506392 (-) 1251 WP_013854470.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40059.70 Da        Isoelectric Point: 8.1933

>NTDB_id=481995 ICI50_RS07405 WP_056941239.1 1501332..1502441(-) (recA) [Lactobacillus kefiranofaciens strain 1207]
MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIINKAGSWYSYKTERIGQGRENAKKYLEDHPDIYQDIQ
EQVRKAYGIDKKSIADRENPEKIKEKREEAEEKIDQKNAEKADQKDKAK

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=481995 ICI50_RS07405 WP_056941239.1 1501332..1502441(-) (recA) [Lactobacillus kefiranofaciens strain 1207]
ATGGCCAAAGATGAAAAAAAGGCTGCCCTTGATGCAGCGCTTAAAAAAATCGAAAAGAATTTTGGTAAAGGTGCTGTTAT
GCGGATGGGCGAAAAGGCTGATACGCAAATATCTACTGTACCTACCGGTTCATTAGCTTTAGATGCCGCCATTGGTGTAG
GTGGCTATCCTCGGGGTCGTATTATTGAAGTCTATGGCCCTGAATCATCTGGTAAGACGACTGTGGCGCTACATGCTGTT
GCTGAAGTACAAAAGCGCGGTGGTACTGCTGCATATATCGATGCTGAAAATGCAATGGACCCCGCTTATGCTGAGGCATT
GGGCGTCGATATTGATTCTTTGATTTTGTCGCAGCCTAACACAGGTGAAGAGGGATTGCAGATCGCAGATACCTTAATTT
CTAGTGGTGCAGTTGATATTGTGGTGGTTGACTCAGTTGCTGCATTAGTACCACGTGCAGAAATTGAAGGTGAAATGGGG
GATGCCCATGTTGGTCTGCAAGCTCGTTTAATGAGTCAAGCTCTGCGGAAATTGTCGGGTACCATTTCTAAAACTAAGAC
AATTGCCATCTTTATCAATCAAATTCGTGAGAAAGTTGGCGTGATGTTTGGTAATCCTGAAACTACTCCTGGTGGTCGTG
CGCTGAAGTTTTATTCAACTATTCGTCTGGAAGTTAGAAGAGCTGAACAGATTAAACAATCAGGTGATGTTTTAGGTAAC
CGAGTTAAGATCAAGGTAGTTAAGAATAAGGTTGCCCCACCTTTCAAGGTAGCTGAAGTTGATATTATGTACGGTAAGGG
TATTTCTCAGAGTGGAGAATTGCTGGATATGGCTGCCGACAAGGATATTATTAATAAGGCTGGTTCATGGTACTCATATA
AGACTGAGCGAATTGGTCAAGGCCGTGAAAATGCTAAAAAGTATCTTGAAGATCATCCAGATATTTATCAAGATATTCAA
GAGCAAGTTCGTAAGGCTTATGGTATTGATAAAAAATCAATTGCTGACCGCGAAAATCCAGAAAAAATAAAGGAAAAGCG
AGAAGAAGCAGAAGAAAAAATTGATCAGAAAAATGCTGAAAAAGCCGATCAAAAAGATAAAGCTAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.675

89.16

0.737
  recA Bacillus subtilis subsp. subtilis str. 168

73.636

89.431

0.659
  recA Streptococcus pneumoniae D39

67.33

95.393

0.642
  recA Streptococcus pneumoniae R6

67.33

95.393

0.642
  recA Streptococcus pneumoniae TIGR4

67.33

95.393

0.642
  recA Streptococcus pneumoniae Rx1

67.33

95.393

0.642
  recA Streptococcus mutans UA159

66.387

96.748

0.642
  recA Streptococcus mitis NCTC 12261

68.421

92.683

0.634
  recA Streptococcus pyogenes NZ131

69.909

89.16

0.623
  recA Streptococcus mitis SK321

69.301

89.16

0.618
  recA Lactococcus lactis subsp. cremoris KW2

66.565

89.16

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

88.889

0.539
  recA Neisseria gonorrhoeae strain FA1090

60.366

88.889

0.537
  recA Neisseria gonorrhoeae MS11

60.366

88.889

0.537
  recA Neisseria gonorrhoeae MS11

60.366

88.889

0.537
  recA Acinetobacter baumannii D1279779

56.484

94.038

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

87.534

0.523
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.927

88.889

0.515
  recA Pseudomonas stutzeri DSM 10701

59.19

86.992

0.515
  recA Acinetobacter baylyi ADP1

58.696

87.263

0.512
  recA Glaesserella parasuis strain SC1401

52.991

95.122

0.504
  recA Helicobacter pylori strain NCTC11637

56.061

89.431

0.501
  recA Helicobacter pylori 26695

56.061

89.431

0.501
  recA Ralstonia pseudosolanacearum GMI1000

59.105

84.824

0.501
  recA Vibrio cholerae strain A1552

56.211

87.263

0.491
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.211

87.263

0.491