Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IC571_RS09170 Genome accession   NZ_CP061321
Coordinates   1776713..1777804 (-) Length   363 a.a.
NCBI ID   WP_215316202.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1771713..1782804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC571_RS09140 (IC571_09130) moaC 1771941..1772414 (+) 474 WP_215316192.1 cyclic pyranopterin monophosphate synthase MoaC -
  IC571_RS09145 (IC571_09135) - 1772464..1772979 (-) 516 WP_215316193.1 pilin -
  IC571_RS09150 (IC571_09140) - 1773136..1773843 (-) 708 WP_215316195.1 TerC family protein -
  IC571_RS09155 (IC571_09145) sucD 1773930..1774823 (-) 894 WP_215316197.1 succinate--CoA ligase subunit alpha -
  IC571_RS09160 (IC571_09150) sucC 1774839..1776008 (-) 1170 WP_215316198.1 ADP-forming succinate--CoA ligase subunit beta -
  IC571_RS09165 (IC571_09155) recX 1776196..1776708 (-) 513 WP_215316200.1 recombination regulator RecX -
  IC571_RS09170 (IC571_09160) recA 1776713..1777804 (-) 1092 WP_215316202.1 recombinase RecA Machinery gene
  IC571_RS09175 (IC571_09165) - 1777924..1778457 (-) 534 WP_215316204.1 DUF2878 domain-containing protein -
  IC571_RS09185 (IC571_09175) - 1778807..1779982 (-) 1176 WP_215316205.1 HD domain-containing phosphohydrolase -
  IC571_RS09190 (IC571_09180) - 1780284..1780907 (+) 624 WP_215316207.1 GGDEF domain-containing protein -
  IC571_RS09195 (IC571_09185) - 1780911..1781852 (-) 942 WP_215316208.1 hypothetical protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38865.38 Da        Isoelectric Point: 4.7801

>NTDB_id=481818 IC571_RS09170 WP_215316202.1 1776713..1777804(-) (recA) [Polynucleobacter sp. MWH-UH2A]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVVD
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPEIAKDIEAKIREKLGVKAGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=481818 IC571_RS09170 WP_215316202.1 1776713..1777804(-) (recA) [Polynucleobacter sp. MWH-UH2A]
ATGGCCTTGGATGATAAAAGAAAGTCAGCCTCCTCAGAATTTGAGGGAATGAGTGGAGATAAGCAAAAGGCGTTAACAGC
AGCTTTAGCGCAAATTGAAAAGCAATTTGGCAAGGGCTCAATCATGAGATTGGGTGACGCTGAAATCAGTCAAGATATTC
AGGTCGTATCCAGCGGTTCATTAGGGTTGGATATCGCACTTGGCGTCGGTGGTCTTGCACGTGGTCGCGTAATTGAAATT
TATGGTCCTGAGTCATCCGGTAAAACCACTTTAACTTTGCATGCGATTGCAGAAATGCAAAAGCTTGGTGGTACCTGCGC
ATTTATTGATGCTGAACATGCGTTAGATGTTCAGTACGCCGGGAAACTGGGTGTTGATGTAAACAATCTGCTGATTTCTC
AACCAGATACTGGTGAGCAAGCTTTGGAAATTGCAGATGCATTAGTCCGCTCTGGTTCAATCGATTTGATCGTGGTTGAC
TCAGTTGCCGCATTGGTTCCAAAGGCTGAAATTGAAGGCGACATGGGCGATTCATTGCCAGGTTTGCAGGCGCGTTTGAT
GAGCCAAGCCCTACGCAAATTGACTGGCGCCATTAAGCGTACTAATACAACGGTCATCTTCATCAACCAAATTCGTATGA
AGATTGGTGTGATGTTTGGCTCTCCAGAAACAACTACTGGCGGTAACGCTTTGAAGTTCTATGCTTCTATGCGTTTAGAT
ATTCGCCGCATCGGTAGCATCAAAAAGGGCGATGAAGTTGTTGGCAATGAAACCCGCGTGAAAGTCGTGAAGAATAAGGT
TTCCCCGCCATTCCGTGAAGCCATTTTTGACATTATGTATGGCGCTGGTATTTCAAGAGAGGGTGAAATTATTGATATGG
GCGTAGAAGCTGATCTCGTTGAAAAATCTGGTTCTTGGTACAGCTACAACGGCGATCGCATTGGGCAAGGTAAAGACAAT
GTGCGTGAATTCTTGAAAGAGAATCCAGAAATCGCTAAAGACATCGAAGCAAAAATTCGCGAGAAATTAGGTGTTAAAGC
GGGATCTGCTGTAGTGACGGATGTGCTAAGTGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.78

98.898

0.799
  recA Neisseria gonorrhoeae MS11

74.545

90.909

0.678
  recA Neisseria gonorrhoeae MS11

74.545

90.909

0.678
  recA Neisseria gonorrhoeae strain FA1090

74.545

90.909

0.678
  recA Acinetobacter baylyi ADP1

70.64

94.766

0.669
  recA Acinetobacter baumannii D1279779

70.349

94.766

0.667
  recA Pseudomonas stutzeri DSM 10701

70.796

93.388

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.588

95.592

0.656
  recA Vibrio cholerae strain A1552

68.588

95.592

0.656
  recA Glaesserella parasuis strain SC1401

69.789

91.185

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.497

94.215

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

68.405

89.807

0.614
  recA Helicobacter pylori 26695

66.871

89.807

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.559

91.185

0.598
  recA Helicobacter pylori strain NCTC11637

66.564

89.807

0.598
  recA Streptococcus pneumoniae D39

60.714

92.562

0.562
  recA Streptococcus pneumoniae Rx1

60.714

92.562

0.562
  recA Streptococcus pneumoniae R6

60.714

92.562

0.562
  recA Streptococcus pneumoniae TIGR4

60.714

92.562

0.562
  recA Streptococcus mutans UA159

58.841

95.041

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

89.807

0.559
  recA Streptococcus mitis NCTC 12261

58.333

95.868

0.559
  recA Streptococcus mitis SK321

60.303

90.909

0.548
  recA Streptococcus pyogenes NZ131

59.574

90.634

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

88.43

0.537
  recA Lactococcus lactis subsp. cremoris KW2

59.091

90.909

0.537