Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GQ359_RS08890 Genome accession   NZ_CP061319
Coordinates   1704390..1705472 (-) Length   360 a.a.
NCBI ID   WP_371822472.1    Uniprot ID   -
Organism   Polynucleobacter sp. AM-7D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699390..1710472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ359_RS08865 (GQ359_08870) - 1700190..1700705 (-) 516 WP_215386779.1 pilin -
  GQ359_RS08870 (GQ359_08875) - 1700816..1701514 (-) 699 WP_215386780.1 TerC family protein -
  GQ359_RS08875 (GQ359_08880) sucD 1701596..1702489 (-) 894 WP_215386782.1 succinate--CoA ligase subunit alpha -
  GQ359_RS08880 (GQ359_08885) sucC 1702505..1703674 (-) 1170 WP_215302026.1 ADP-forming succinate--CoA ligase subunit beta -
  GQ359_RS08885 (GQ359_08890) recX 1703846..1704382 (-) 537 WP_215386784.1 recombination regulator RecX -
  GQ359_RS08890 (GQ359_08895) recA 1704390..1705472 (-) 1083 WP_371822472.1 recombinase RecA Machinery gene
  GQ359_RS08895 (GQ359_08900) - 1705594..1706124 (-) 531 WP_215386788.1 DUF2878 domain-containing protein -
  GQ359_RS08905 (GQ359_08910) - 1706306..1706959 (-) 654 WP_215386790.1 VTT domain-containing protein -
  GQ359_RS08910 (GQ359_08915) - 1707012..1707419 (-) 408 WP_215386792.1 hypothetical protein -
  GQ359_RS08915 (GQ359_08920) - 1707466..1708077 (+) 612 WP_215386793.1 MOSC domain-containing protein -
  GQ359_RS08920 (GQ359_08925) - 1708138..1709808 (-) 1671 WP_215386795.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38561.98 Da        Isoelectric Point: 4.9703

>NTDB_id=481807 GQ359_RS08890 WP_371822472.1 1704390..1705472(-) (recA) [Polynucleobacter sp. AM-7D1]
MDDKKKSASSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSV
AALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIR
RIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDNVR
EFLKENPTIAQDIESKIRAKLGVKAGTAVVSDVLSEEEEA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=481807 GQ359_RS08890 WP_371822472.1 1704390..1705472(-) (recA) [Polynucleobacter sp. AM-7D1]
TTGGATGATAAGAAGAAATCAGCCTCATCAGAGTTTGACGGCATGAGTGGAGACAAGCAAAAGGCATTAACAGCTGCTTT
GGCGCAAATTGAAAAGCAATTTGGCAAAGGCTCAATCATGAGATTGGGTGATGCAGAGATTCATCAAGATATTCAAGTAG
TTTCTAGTGGGTCATTGGGTTTAGACATTGCTCTGGGTGTTGGTGGCTTGGCGCGTGGGCGCGTGATTGAGATTTACGGC
CCAGAGTCTTCAGGAAAGACAACATTAACTTTGCATGCGATTGCAGAGATGCAAAAGATAGGTGGAACTTGCGCCTTTAT
TGATGCCGAGCACGCTTTGGATGTTCAGTACGCTTCACGCTTAGGTGTAGATGTTAATAATTTATTGATCTCTCAGCCCG
ATACTGGTGAACAAGCATTGGAAATTGCTGATGCTTTAGTGCGTTCAGGCTCAATCGATTTAATCGTAATCGACTCAGTA
GCAGCCTTAGTACCAAGAGCAGAAATTGAAGGCGACATGGGCGATTCATTGCCAGGTCTGCAGGCGCGCTTGATGAGTCA
GGCATTGCGTAAATTAACTGGCGCAATTAAGCGCACTAACACTACAGTCATTTTCATTAACCAAATTCGAATGAAGATTG
GCGTGATGTTTGGTTCCCCTGAAACTACTACTGGCGGTAATGCGCTGAAGTTTTATGCTTCTATGCGTCTAGATATTCGT
CGCATCGGCAGTATTAAGAAGGGCGACGAAGTGGTCGGCAACGAGACTCGCGTGAAGGTAGTGAAGAATAAGGTCTCACC
TCCATTCCGCGAAGCCATCTTTGACATCATGTACGGCGCCGGCATCTCTAGAGAAGGTGAAATTATTGATATGGGTGTTG
AAGCCGATATCGTAGAAAAATCAGGCTCTTGGTATAGCTACAACGGTGATCGCATTGGTCAAGGAAAAGATAATGTGCGC
GAGTTCTTAAAAGAGAACCCAACCATTGCACAAGATATTGAATCAAAGATTCGTGCGAAATTGGGTGTCAAGGCTGGAAC
AGCAGTAGTGAGCGATGTTTTGAGTGAAGAAGAGGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.223

99.722

0.8
  recA Neisseria gonorrhoeae MS11

73.636

91.667

0.675
  recA Neisseria gonorrhoeae MS11

73.636

91.667

0.675
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.667

0.675
  recA Acinetobacter baumannii D1279779

69.767

95.556

0.667
  recA Acinetobacter baylyi ADP1

69.477

95.556

0.664
  recA Pseudomonas stutzeri DSM 10701

69.322

94.167

0.653
  recA Vibrio cholerae strain A1552

70.031

90.833

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.031

90.833

0.636
  recA Glaesserella parasuis strain SC1401

70.279

89.722

0.631
  recA Helicobacter pylori 26695

64.431

95.278

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

67.485

90.556

0.611
  recA Helicobacter pylori strain NCTC11637

64.14

95.278

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

95

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.944

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

90.556

0.569
  recA Streptococcus pneumoniae D39

60.714

93.333

0.567
  recA Streptococcus pneumoniae R6

60.714

93.333

0.567
  recA Streptococcus pneumoniae TIGR4

60.714

93.333

0.567
  recA Streptococcus pneumoniae Rx1

60.714

93.333

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.841

95.833

0.564
  recA Lactococcus lactis subsp. cremoris KW2

57.835

97.5

0.564
  recA Streptococcus pyogenes NZ131

58.721

95.556

0.561
  recA Streptococcus mitis NCTC 12261

59.821

93.333

0.558
  recA Streptococcus mitis SK321

60.303

91.667

0.553
  recA Streptococcus mutans UA159

60

91.667

0.55