Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2745_RS08460 Genome accession   NZ_CP061315
Coordinates   1699954..1700997 (-) Length   347 a.a.
NCBI ID   WP_251368319.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Kolm-20A-A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1694954..1705997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2745_RS08435 (C2745_08435) - 1695709..1696233 (-) 525 WP_215384158.1 pilin -
  C2745_RS08440 (C2745_08440) - 1696353..1697060 (-) 708 WP_215384159.1 TerC family protein -
  C2745_RS08445 (C2745_08445) sucD 1697163..1698056 (-) 894 WP_215384160.1 succinate--CoA ligase subunit alpha -
  C2745_RS08450 (C2745_08450) sucC 1698072..1699241 (-) 1170 WP_011903667.1 ADP-forming succinate--CoA ligase subunit beta -
  C2745_RS08455 (C2745_08455) recX 1699431..1699949 (-) 519 WP_215384161.1 recombination regulator RecX -
  C2745_RS08460 (C2745_08460) recA 1699954..1700997 (-) 1044 WP_251368319.1 recombinase RecA Machinery gene
  C2745_RS08465 (C2745_08465) - 1701165..1701698 (-) 534 WP_215384164.1 DUF2878 domain-containing protein -
  C2745_RS08475 (C2745_08475) - 1701914..1702321 (-) 408 WP_215384166.1 hypothetical protein -
  C2745_RS08480 (C2745_08480) - 1702371..1702982 (+) 612 WP_215384168.1 MOSC domain-containing protein -
  C2745_RS08485 (C2745_08485) - 1703036..1704706 (-) 1671 WP_215384170.1 MFS transporter -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37183.54 Da        Isoelectric Point: 4.8742

>NTDB_id=481774 C2745_RS08460 WP_251368319.1 1699954..1700997(-) (recA) [Polynucleobacter sp. AP-Kolm-20A-A1]
MSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEIYGPESSGKTTLTLHAI
AEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSVAALVPKAEIEGDMG
DSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGN
ETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDNVREFLKENPAIAQDIE
KKIREKLGVKAGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=481774 C2745_RS08460 WP_251368319.1 1699954..1700997(-) (recA) [Polynucleobacter sp. AP-Kolm-20A-A1]
ATGAGCGGAGACAAGCAAAAAGCATTAACAGCAGCACTGGCACAAATCGAGAAGCAGTTTGGTAAGGGCTCAATCATGAG
ATTGGGCGATGCTGAAATTAGCCAAGATATTCAGGTGGTATCTAGCGGTTCCCTGGGATTGGATATTGCACTTGGAGTTG
GTGGCCTTGCACGTGGTCGCGTGATTGAAATCTACGGCCCAGAATCTTCCGGTAAGACAACTTTGACATTGCATGCAATT
GCAGAAATGCAAAAGCTTGGCGGTACTTGCGCATTTATCGACGCTGAGCACGCATTGGATGTGCAGTACGCATCACGTCT
TGGTGTTGACGTAAATAATTTATTGATTTCACAGCCTGACACTGGTGAGCAGGCTTTAGAAATCGCTGATGCATTAGTTC
GTTCAGGCTCGATTGACTTGATCGTGATCGACTCAGTTGCTGCCTTGGTTCCAAAGGCGGAGATTGAGGGCGATATGGGT
GATTCCTTACCTGGCTTGCAAGCTCGTTTGATGAGTCAAGCCTTACGTAAGTTGACTGGCGCGATTAAGCGTACAAATAC
GACTGTGATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGATCTCCAGAAACTACTACTGGCGGTAATG
CACTCAAGTTCTATGCTTCTATGCGTTTAGATATCCGCCGTATTGGCAGCATCAAAAAAGGCGATGAGGTTGTTGGCAAT
GAAACTCGTGTGAAGGTTGTGAAGAACAAAGTTTCTCCTCCATTCCGCGAAGCCATTTTTGACATCATGTACGGCGCTGG
AATTTCTAGAGAAGGTGAAATCATTGATATGGGTGTTGAGGCTGACCTTGTTGAGAAATCAGGCTCTTGGTATAGCTATA
ACGGCGATCGCATTGGTCAGGGCAAAGACAATGTTCGTGAGTTCTTAAAAGAGAATCCAGCTATCGCTCAAGATATCGAG
AAAAAGATTCGTGAGAAGCTTGGGGTGAAAGCGGGCTCAGCAGTGGTTACTGATGTGCTGAGCGAGGAAGAGGAAGTCGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.609

99.424

0.821
  recA Neisseria gonorrhoeae MS11

73.333

95.101

0.697
  recA Neisseria gonorrhoeae MS11

73.333

95.101

0.697
  recA Neisseria gonorrhoeae strain FA1090

73.333

95.101

0.697
  recA Acinetobacter baylyi ADP1

69.767

99.135

0.692
  recA Acinetobacter baumannii D1279779

69.767

99.135

0.692
  recA Pseudomonas stutzeri DSM 10701

69.912

97.695

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.723

100

0.677
  recA Vibrio cholerae strain A1552

67.723

100

0.677
  recA Glaesserella parasuis strain SC1401

69.184

95.389

0.66
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

93.948

0.637
  recA Helicobacter pylori 26695

67.178

93.948

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.663

95.677

0.628
  recA Helicobacter pylori strain NCTC11637

66.871

93.948

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.257

95.389

0.622
  recA Streptococcus pneumoniae D39

60.417

96.83

0.585
  recA Streptococcus pneumoniae R6

60.417

96.83

0.585
  recA Streptococcus pneumoniae TIGR4

60.417

96.83

0.585
  recA Streptococcus pneumoniae Rx1

60.417

96.83

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

93.948

0.582
  recA Streptococcus mitis NCTC 12261

57.759

100

0.579
  recA Streptococcus mitis SK321

59.697

95.101

0.568
  recA Streptococcus mutans UA159

59.394

95.101

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.394

95.101

0.565
  recA Streptococcus pyogenes NZ131

59.271

94.813

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

92.507

0.559