Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2758_RS09385 Genome accession   NZ_CP061312
Coordinates   1793884..1794972 (-) Length   362 a.a.
NCBI ID   WP_215327986.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Sving-400A-A2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788884..1799972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2758_RS09355 (C2758_09340) moaC 1789145..1789621 (+) 477 WP_215327980.1 cyclic pyranopterin monophosphate synthase MoaC -
  C2758_RS09360 (C2758_09345) - 1789694..1790191 (-) 498 WP_215327981.1 pilin -
  C2758_RS09365 (C2758_09350) - 1790314..1791021 (-) 708 WP_215327982.1 TerC family protein -
  C2758_RS09370 (C2758_09355) sucD 1791103..1791996 (-) 894 WP_215308421.1 succinate--CoA ligase subunit alpha -
  C2758_RS09375 (C2758_09360) sucC 1792011..1793180 (-) 1170 WP_215327983.1 ADP-forming succinate--CoA ligase subunit beta -
  C2758_RS09380 (C2758_09365) recX 1793340..1793876 (-) 537 WP_215327984.1 recombination regulator RecX -
  C2758_RS09385 (C2758_09370) recA 1793884..1794972 (-) 1089 WP_215327986.1 recombinase RecA Machinery gene
  C2758_RS09390 (C2758_09375) - 1795090..1795623 (-) 534 WP_215327988.1 DUF2878 domain-containing protein -
  C2758_RS09395 (C2758_09380) - 1795901..1796794 (-) 894 WP_215327990.1 group I intron-associated PD-(D/E)XK endonuclease -
  C2758_RS09400 (C2758_09385) dcm 1796841..1797791 (-) 951 WP_215327992.1 DNA (cytosine-5-)-methyltransferase -
  C2758_RS09405 (C2758_09390) - 1797875..1798447 (+) 573 WP_215327993.1 hypothetical protein -
  C2758_RS09410 (C2758_09395) - 1798650..1799093 (+) 444 WP_215327994.1 hypothetical protein -
  C2758_RS09415 (C2758_09400) - 1799090..1799563 (+) 474 WP_215327995.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38728.25 Da        Isoelectric Point: 5.0613

>NTDB_id=481751 C2758_RS09385 WP_215327986.1 1793884..1794972(-) (recA) [Polynucleobacter sp. AP-Sving-400A-A2]
MAFDDKRKSASPEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYAYNGDRIGQGKDN
VREFLKENPAIAQDIEAKIRAKLGVKTGTAIVSDVLSEEEGA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=481751 C2758_RS09385 WP_215327986.1 1793884..1794972(-) (recA) [Polynucleobacter sp. AP-Sving-400A-A2]
ATGGCCTTCGACGATAAGAGAAAATCAGCCTCACCCGAATTTGACGGTATGAGCGGAGACAAGCAAAAAGCATTAACTGC
AGCCTTAGCGCAAATTGAGAAGCAATTTGGTAAGGGCTCAATCATGAGATTGGGCGATGCAGAGATTCATCAGGACATTC
AGGTAGTTTCCAGCGGCTCATTAGGTTTAGATATTGCACTTGGAGTCGGTGGTTTAGCCCGTGGGCGCGTCATTGAGATT
TATGGCCCAGAATCTTCAGGTAAGACCACTTTGACTTTGCATGCGATTGCAGAGATGCAAAAGATTGGTGGAACTTGTGC
CTTCATCGATGCGGAGCATGCCTTAGATGTTCAGTACGCTTCACGCTTAGGTGTAGATGTGAACAATCTGTTGATCTCCC
AACCAGATACTGGCGAGCAAGCATTGGAAATTGCAGATGCCTTAGTGCGTTCAGGCTCTATCGATTTAATTGTCATTGAC
TCCGTGGCAGCCTTGGTTCCAAGGGCTGAGATCGAGGGCGATATGGGCGACTCATTACCTGGCCTCCAAGCCCGTCTGAT
GAGCCAAGCCTTACGTAAGTTGACTGGCGCGATCAAGCGTACCAATACAACCGTTATCTTTATTAACCAGATCCGTATGA
AAATTGGCGTGATGTTTGGTTCGCCTGAAACTACAACTGGTGGTAACGCACTGAAGTTCTACGCCTCCATGCGTTTGGAT
ATTCGTCGTATCGGCAGTATTAAGAAGGGCGATGAAGTAGTTGGTAACGAAACTCGCGTCAAGGTAGTTAAGAACAAGGT
ATCACCACCATTCCGCGAAGCCATCTTTGACATCATGTACGGCGCTGGAATTTCTCGAGAAGGTGAAATTATCGATATGG
GTGTTGAGGCTGATATCGTTGAAAAATCAGGTTCTTGGTATGCCTACAACGGTGATCGCATTGGCCAAGGAAAAGACAAT
GTGCGTGAGTTTTTGAAAGAGAATCCAGCCATTGCTCAAGATATTGAAGCTAAGATTCGTGCGAAATTGGGTGTAAAGAC
TGGCACAGCGATCGTCAGTGATGTTTTGAGCGAAGAAGAGGGAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.272

98.619

0.782
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.16

0.671
  recA Acinetobacter baumannii D1279779

69.767

95.028

0.663
  recA Acinetobacter baylyi ADP1

69.186

95.028

0.657
  recA Pseudomonas stutzeri DSM 10701

69.617

93.646

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.725

90.331

0.63
  recA Vibrio cholerae strain A1552

69.725

90.331

0.63
  recA Glaesserella parasuis strain SC1401

69.969

89.227

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.584

95.58

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

90.055

0.605
  recA Helicobacter pylori 26695

66.564

90.055

0.599
  recA Helicobacter pylori strain NCTC11637

66.258

90.055

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

91.436

0.591
  recA Lactococcus lactis subsp. cremoris KW2

58.79

95.856

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.055

0.564
  recA Streptococcus mutans UA159

58.551

95.304

0.558
  recA Streptococcus pneumoniae D39

60.119

92.818

0.558
  recA Streptococcus pneumoniae Rx1

60.119

92.818

0.558
  recA Streptococcus pneumoniae R6

60.119

92.818

0.558
  recA Streptococcus pneumoniae TIGR4

60.119

92.818

0.558
  recA Streptococcus mitis NCTC 12261

59.821

92.818

0.555
  recA Streptococcus mitis SK321

59.76

91.989

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

89.779

0.541
  recA Streptococcus pyogenes NZ131

59.574

90.884

0.541