Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FD974_RS08500 Genome accession   NZ_CP061310
Coordinates   1668439..1669521 (-) Length   360 a.a.
NCBI ID   WP_371817139.1    Uniprot ID   -
Organism   Polynucleobacter sp. es-EL-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1663439..1674521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD974_RS08475 (FD974_08470) - 1664231..1664746 (-) 516 WP_215364238.1 pilin -
  FD974_RS08480 (FD974_08475) - 1664857..1665555 (-) 699 WP_215364239.1 TerC family protein -
  FD974_RS08485 (FD974_08480) sucD 1665638..1666531 (-) 894 WP_215364240.1 succinate--CoA ligase subunit alpha -
  FD974_RS08490 (FD974_08485) sucC 1666547..1667716 (-) 1170 WP_215364242.1 ADP-forming succinate--CoA ligase subunit beta -
  FD974_RS08495 (FD974_08490) - 1667895..1668431 (-) 537 WP_215364244.1 RecX family transcriptional regulator -
  FD974_RS08500 (FD974_08495) recA 1668439..1669521 (-) 1083 WP_371817139.1 recombinase RecA Machinery gene
  FD974_RS08505 (FD974_08500) - 1669643..1670173 (-) 531 WP_215364248.1 DUF2878 domain-containing protein -
  FD974_RS08515 (FD974_08510) - 1670355..1671008 (-) 654 WP_215364249.1 VTT domain-containing protein -
  FD974_RS08520 (FD974_08515) - 1671119..1671529 (-) 411 WP_215364251.1 hypothetical protein -
  FD974_RS08525 (FD974_08520) - 1671573..1672184 (+) 612 WP_215364253.1 MOSC domain-containing protein -
  FD974_RS08530 (FD974_08525) - 1672248..1673918 (-) 1671 WP_215364254.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38573.99 Da        Isoelectric Point: 4.8950

>NTDB_id=481740 FD974_RS08500 WP_371817139.1 1668439..1669521(-) (recA) [Polynucleobacter sp. es-EL-1]
MDDKKKSASSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSV
AALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIR
RIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDNVR
EFLKENPAIAQDIEAKIREKLGVKAGTAVISDVVSEEEEA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=481740 FD974_RS08500 WP_371817139.1 1668439..1669521(-) (recA) [Polynucleobacter sp. es-EL-1]
TTGGATGATAAGAAAAAATCAGCCTCATCAGAGTTTGACGGCATGAGTGGGGACAAGCAAAAGGCCTTAACTGCGGCCTT
GGCACAAATTGAAAAGCAATTCGGTAAAGGCTCAATCATGCGATTGGGCGACGCAGAGATACATCAAGATATTCAAGTCG
TTTCCAGTGGTTCATTAGGTTTAGATATTGCGCTAGGAGTAGGTGGGTTGGCGCGCGGCCGTGTCATTGAAATTTATGGG
CCAGAGTCATCAGGAAAAACAACACTGACTTTGCACGCGATTGCAGAAATGCAAAAGATCGGCGGCACCTGTGCATTTAT
TGATGCTGAGCATGCGCTGGATGTGCAATACGCGTCACGCCTAGGTGTTGATGTGAATAATCTGTTGATTTCACAACCAG
ATACTGGCGAGCAAGCATTGGAAATTGCCGATGCATTAGTGCGGTCAGGTTCAATTGACTTAATCGTGATTGACTCAGTA
GCAGCCTTGGTACCAAGAGCGGAGATTGAGGGCGACATGGGCGATTCATTGCCTGGCTTGCAGGCTCGCTTGATGAGTCA
GGCCTTACGTAAATTGACTGGTGCAATTAAGCGTACTAATACAACAGTGATCTTTATTAACCAGATTCGAATGAAGATTG
GTGTGATGTTCGGTTCCCCTGAAACCACGACTGGCGGTAATGCATTGAAGTTCTATGCCTCGATGCGTTTAGATATTCGT
CGCATTGGTAGCATCAAGAAGGGCGATGAGGTAGTGGGTAATGAGACTCGCGTGAAGGTAGTCAAGAACAAGGTTTCTCC
TCCGTTCCGTGAAGCAATCTTTGACATCATGTATGGCGCTGGAATCTCAAGAGAGGGTGAAATCATTGATATGGGCGTAG
AGGCGGATATCGTTGAAAAGTCAGGTTCTTGGTATAGCTATAACGGTGATCGCATCGGTCAGGGCAAAGATAATGTGCGT
GAATTCTTGAAAGAAAACCCAGCCATTGCTCAAGATATCGAAGCCAAGATTCGTGAGAAGTTAGGCGTTAAGGCAGGCAC
AGCAGTAATTAGTGATGTTGTGAGCGAAGAAGAGGAAGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.888

99.444

0.794
  recA Neisseria gonorrhoeae MS11

73.636

91.667

0.675
  recA Neisseria gonorrhoeae MS11

73.636

91.667

0.675
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.667

0.675
  recA Acinetobacter baylyi ADP1

70.058

95.556

0.669
  recA Acinetobacter baumannii D1279779

70.058

95.556

0.669
  recA Pseudomonas stutzeri DSM 10701

67.919

96.111

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.336

90.833

0.639
  recA Vibrio cholerae strain A1552

70.336

90.833

0.639
  recA Glaesserella parasuis strain SC1401

70.279

89.722

0.631
  recA Helicobacter pylori 26695

65.015

95.278

0.619
  recA Helicobacter pylori strain NCTC11637

64.723

95.278

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.62

95

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

90.556

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.944

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

61.471

94.444

0.581
  recA Streptococcus pneumoniae D39

60.714

93.333

0.567
  recA Streptococcus pneumoniae Rx1

60.714

93.333

0.567
  recA Streptococcus pneumoniae R6

60.714

93.333

0.567
  recA Streptococcus pneumoniae TIGR4

60.714

93.333

0.567
  recA Lactococcus lactis subsp. cremoris KW2

57.55

97.5

0.561
  recA Streptococcus pyogenes NZ131

58.721

95.556

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.524

93.333

0.556
  recA Streptococcus mitis NCTC 12261

60.606

91.667

0.556
  recA Streptococcus mitis SK321

60.303

91.667

0.553
  recA Streptococcus mutans UA159

60

91.667

0.55