Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICV90_RS09050 Genome accession   NZ_CP061306
Coordinates   1792254..1793339 (-) Length   361 a.a.
NCBI ID   WP_370623815.1    Uniprot ID   -
Organism   Polynucleobacter sp. JS-JIR-II-b4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787254..1798339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV90_RS09015 (ICV90_09035) - 1787336..1787581 (+) 246 WP_215358611.1 helix-turn-helix domain-containing protein -
  ICV90_RS09020 (ICV90_09040) - 1787845..1787973 (+) 129 Protein_1766 cyclic pyranopterin monophosphate synthase MoaC -
  ICV90_RS09025 (ICV90_09045) - 1788029..1788541 (-) 513 WP_215358612.1 pilin -
  ICV90_RS09030 (ICV90_09050) - 1788669..1789370 (-) 702 WP_215321007.1 TerC family protein -
  ICV90_RS09035 (ICV90_09055) sucD 1789461..1790354 (-) 894 WP_072582760.1 succinate--CoA ligase subunit alpha -
  ICV90_RS09040 (ICV90_09060) sucC 1790370..1791539 (-) 1170 WP_011903667.1 ADP-forming succinate--CoA ligase subunit beta -
  ICV90_RS09045 (ICV90_09065) recX 1791728..1792249 (-) 522 WP_215358613.1 recombination regulator RecX -
  ICV90_RS09050 (ICV90_09070) recA 1792254..1793339 (-) 1086 WP_370623815.1 recombinase RecA Machinery gene
  ICV90_RS09055 (ICV90_09075) - 1793454..1793996 (-) 543 WP_215358614.1 DUF2878 domain-containing protein -
  ICV90_RS09065 (ICV90_09085) - 1794206..1794637 (-) 432 WP_215358615.1 hypothetical protein -
  ICV90_RS09070 (ICV90_09090) - 1794695..1795018 (+) 324 WP_215358616.1 DUF6150 family protein -
  ICV90_RS09075 (ICV90_09095) - 1795049..1795660 (+) 612 WP_215358617.1 MOSC domain-containing protein -
  ICV90_RS09080 (ICV90_09100) - 1795714..1797384 (-) 1671 WP_215358618.1 MFS transporter -
  ICV90_RS09085 (ICV90_09105) - 1797562..1798191 (-) 630 WP_215358619.1 trimeric intracellular cation channel family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38738.15 Da        Isoelectric Point: 4.8286

>NTDB_id=481729 ICV90_RS09050 WP_370623815.1 1792254..1793339(-) (recA) [Polynucleobacter sp. JS-JIR-II-b4]
MDNKKQSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSV
AALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIR
RIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDNVR
EFLKENPAIAKDIEARIREKLGVKSGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=481729 ICV90_RS09050 WP_370623815.1 1792254..1793339(-) (recA) [Polynucleobacter sp. JS-JIR-II-b4]
TTGGATAACAAAAAGCAATCAGCCTCTTCAGAATTTGAAGGAATGAGCGGGGACAAGCAAAAAGCATTAACTGCAGCACT
GGCACAAATTGAGAAACAGTTTGGCAAAGGTTCAATCATGAGATTGGGCGATGCCGAAATTAGTCAAGACATTCAGGTGG
TGTCTAGTGGTTCACTCGGATTAGATATCGCTCTTGGAGTTGGTGGTCTTGCACGTGGTCGCGTGATTGAAATCTACGGC
CCAGAATCTTCTGGCAAAACAACTTTGACATTACATGCGATTGCAGAAATGCAAAAGCTTGGCGGCACTTGCGCATTTAT
TGATGCAGAACATGCATTGGATGTGCAGTACGCATCTCGTCTCGGCGTGGATGTAAATAATTTGTTGATCTCTCAACCAG
ACACTGGTGAACAAGCGTTAGAAATTGCAGATGCATTAGTTCGCTCAGGCTCTATTGATTTAATCGTCATTGACTCTGTT
GCTGCTTTGGTTCCAAGGGCTGAGATCGAAGGCGATATGGGCGATTCTTTACCAGGCTTGCAAGCCCGTTTGATGAGTCA
GGCTTTACGTAAGTTAACTGGTGCTATCAAGCGTACCAACACTACTGTGATCTTCATTAACCAGATTCGTATGAAGATTG
GTGTGATGTTTGGTTCCCCAGAAACCACTACTGGTGGTAATGCGCTGAAGTTCTACGCCTCTATGCGTTTAGATATCCGT
CGTATTGGTAGCATCAAAAAAGGCGATGAGGTTGTTGGTAATGAAACCCGCGTGAAGGTTGTGAAGAACAAAGTTTCTCC
TCCATTCCGTGAGGCAATTTTTGACATCATGTACGGTGCTGGTATTTCCAGAGAGGGCGAAATTATTGATATGGGTGTCG
AAGCTGACCTCGTTGAAAAGTCAGGCTCTTGGTATAGCTATAACGGTGATCGCATTGGTCAAGGTAAAGACAATGTGCGT
GAGTTCTTAAAAGAGAACCCAGCCATTGCCAAAGATATCGAAGCAAGAATTCGCGAGAAATTGGGCGTTAAATCTGGTTC
AGCAGTAGTAACGGATGTGCTGAGTGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.944

99.446

0.795
  recA Neisseria gonorrhoeae MS11

73.03

91.413

0.668
  recA Neisseria gonorrhoeae MS11

73.03

91.413

0.668
  recA Neisseria gonorrhoeae strain FA1090

73.03

91.413

0.668
  recA Acinetobacter baylyi ADP1

69.477

95.291

0.662
  recA Acinetobacter baumannii D1279779

69.477

95.291

0.662
  recA Pseudomonas stutzeri DSM 10701

69.617

93.906

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.147

96.122

0.645
  recA Vibrio cholerae strain A1552

67.147

96.122

0.645
  recA Glaesserella parasuis strain SC1401

68.882

91.69

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

66.566

91.967

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.737

0.607
  recA Helicobacter pylori 26695

66.564

90.305

0.601
  recA Helicobacter pylori strain NCTC11637

66.258

90.305

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

91.69

0.593
  recA Streptococcus pneumoniae R6

60.417

93.075

0.562
  recA Streptococcus pneumoniae Rx1

60.417

93.075

0.562
  recA Streptococcus pneumoniae D39

60.417

93.075

0.562
  recA Streptococcus pneumoniae TIGR4

60.417

93.075

0.562
  recA Streptococcus mitis NCTC 12261

58.046

96.399

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

90.305

0.56
  recA Streptococcus pyogenes NZ131

58.14

95.291

0.554
  recA Streptococcus mitis SK321

59.76

92.244

0.551
  recA Streptococcus mutans UA159

59.394

91.413

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.333

93.075

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

88.92

0.54