Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2740_RS08030 Genome accession   NZ_CP061304
Coordinates   1570533..1571624 (-) Length   363 a.a.
NCBI ID   WP_215293036.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-5-Ahmo-C2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565533..1576624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2740_RS08005 (C2740_08010) - 1566283..1566795 (-) 513 WP_215293026.1 pilin -
  C2740_RS08010 (C2740_08015) - 1566917..1567624 (-) 708 WP_215293028.1 TerC family protein -
  C2740_RS08015 (C2740_08020) sucD 1567734..1568627 (-) 894 WP_215293030.1 succinate--CoA ligase subunit alpha -
  C2740_RS08020 (C2740_08025) sucC 1568643..1569812 (-) 1170 WP_215293032.1 ADP-forming succinate--CoA ligase subunit beta -
  C2740_RS08025 (C2740_08030) recX 1570001..1570528 (-) 528 WP_215293034.1 recombination regulator RecX -
  C2740_RS08030 (C2740_08035) recA 1570533..1571624 (-) 1092 WP_215293036.1 recombinase RecA Machinery gene
  C2740_RS08035 (C2740_08040) - 1571743..1572276 (-) 534 WP_215293038.1 DUF2878 domain-containing protein -
  C2740_RS08045 (C2740_08050) - 1572557..1572943 (+) 387 WP_215293040.1 hypothetical protein -
  C2740_RS08050 (C2740_08055) - 1573032..1573352 (+) 321 WP_215293041.1 DUF6150 family protein -
  C2740_RS08055 (C2740_08060) - 1573367..1573978 (+) 612 WP_215293043.1 MOSC domain-containing protein -
  C2740_RS08060 (C2740_08065) - 1574033..1575703 (-) 1671 WP_215293045.1 MFS transporter -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38895.41 Da        Isoelectric Point: 4.8361

>NTDB_id=481718 C2740_RS08030 WP_215293036.1 1570533..1571624(-) (recA) [Polynucleobacter sp. MG-5-Ahmo-C2]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=481718 C2740_RS08030 WP_215293036.1 1570533..1571624(-) (recA) [Polynucleobacter sp. MG-5-Ahmo-C2]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCCTCAGAATTTGAGGGAATGAGCGGAGATAAGCAAAAAGCATTAACAGC
AGCCTTGGCGCAAATTGAGAAGCAATTTGGCAAGGGTTCAATCATGAGATTGGGCGATGCTGAAATTAGCCAAGATATTC
AAGTGGTATCCAGTGGATCACTCGGTCTTGATATTGCCCTTGGAGTTGGCGGTCTAGCACGTGGTCGAGTGATTGAGATC
TACGGACCAGAATCATCCGGAAAAACAACATTGACTCTGCATGCGATTGCAGAAATGCAAAAGCTCGGTGGTACTTGTGC
CTTTATTGATGCTGAGCATGCTTTAGATGTTCAGTACGCATCACGTTTAGGCGTTGATGTAAATAACCTATTGATCTCTC
AACCTGATACCGGTGAACAAGCTTTAGAAATCGCTGATGCGTTAGTGCGCTCAGGCTCTATTGATTTGATCGTAATTGAT
TCGGTTGCTGCATTGGTTCCAAAGGCTGAGATTGAAGGTGATATGGGAGATTCATTGCCAGGCCTGCAGGCTCGTTTAAT
GAGTCAAGCGTTGCGTAAGTTGACTGGCGCGATCAAGCGTACAAATACAACCGTAATCTTTATTAACCAAATTCGCATGA
AGATTGGCGTGATGTTTGGTTCGCCAGAGACTACAACTGGTGGTAATGCACTGAAGTTCTATGCCTCTATGCGTTTGGAT
ATTCGTCGCATCGGTAGTATCAAAAAAGGTGATGAGGTGGTTGGTAATGAAACCCGTGTGAAGGTTGTAAAGAACAAGGT
TTCTCCTCCATTCCGCGAGGCGATTTTTGACATCATGTACGGCGCTGGTATTTCTAGAGAAGGCGAAATCATTGATATGG
GCGTTGAGGCTGACCTCGTTGAAAAATCCGGTTCTTGGTATAGCTACAACGGCGATCGTATTGGTCAAGGTAAGGATAAT
GTGCGCGAGTTCCTAAAAGAGAACCCAGCAATTGCTAAGGATATCGAGGCAAAGATTCGCGAAAAGTTGGGTGTTAAATC
TGGCTCAGCGGTGGTTACTGATGTGCTGAGCGAAGAAGAGGAAGTCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.501

98.898

0.796
  recA Neisseria gonorrhoeae MS11

73.636

90.909

0.669
  recA Neisseria gonorrhoeae MS11

73.636

90.909

0.669
  recA Neisseria gonorrhoeae strain FA1090

73.636

90.909

0.669
  recA Acinetobacter baylyi ADP1

69.767

94.766

0.661
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Pseudomonas stutzeri DSM 10701

69.912

93.388

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.723

95.592

0.647
  recA Vibrio cholerae strain A1552

67.723

95.592

0.647
  recA Glaesserella parasuis strain SC1401

69.184

91.185

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

66.867

91.46

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.62

94.215

0.609
  recA Helicobacter pylori 26695

67.178

89.807

0.603
  recA Helicobacter pylori strain NCTC11637

66.871

89.807

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.185

0.592
  recA Streptococcus pneumoniae D39

60.119

92.562

0.556
  recA Streptococcus pneumoniae Rx1

60.119

92.562

0.556
  recA Streptococcus pneumoniae R6

60.119

92.562

0.556
  recA Streptococcus pneumoniae TIGR4

60.119

92.562

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

89.807

0.556
  recA Streptococcus mitis NCTC 12261

57.759

95.868

0.554
  recA Streptococcus mutans UA159

58.261

95.041

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.929

92.562

0.545
  recA Streptococcus mitis SK321

59.459

91.736

0.545
  recA Streptococcus pyogenes NZ131

59.271

90.634

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

88.43

0.532