Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2759_RS09175 Genome accession   NZ_CP061302
Coordinates   1756557..1757645 (-) Length   362 a.a.
NCBI ID   WP_046330807.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-Unter2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751557..1762645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2759_RS09145 (C2759_09145) moaC 1751825..1752298 (+) 474 WP_215354921.1 cyclic pyranopterin monophosphate synthase MoaC -
  C2759_RS09150 (C2759_09150) - 1752373..1752870 (-) 498 WP_305849428.1 pilin -
  C2759_RS09155 (C2759_09155) - 1752996..1753694 (-) 699 WP_215354924.1 TerC family protein -
  C2759_RS09160 (C2759_09160) sucD 1753776..1754669 (-) 894 WP_215354926.1 succinate--CoA ligase subunit alpha -
  C2759_RS09165 (C2759_09165) sucC 1754684..1755853 (-) 1170 WP_215354929.1 ADP-forming succinate--CoA ligase subunit beta -
  C2759_RS09170 (C2759_09170) recX 1756013..1756549 (-) 537 WP_215354931.1 recombination regulator RecX -
  C2759_RS09175 (C2759_09175) recA 1756557..1757645 (-) 1089 WP_046330807.1 recombinase RecA Machinery gene
  C2759_RS09180 (C2759_09180) - 1757762..1758295 (-) 534 WP_215354932.1 DUF2878 domain-containing protein -
  C2759_RS09190 (C2759_09190) - 1758455..1759108 (-) 654 WP_215354934.1 VTT domain-containing protein -
  C2759_RS09195 (C2759_09195) - 1759198..1759584 (-) 387 WP_251366958.1 hypothetical protein -
  C2759_RS09200 (C2759_09200) - 1759650..1760270 (+) 621 WP_215354937.1 MOSC domain-containing protein -
  C2759_RS09205 (C2759_09205) - 1760342..1762012 (-) 1671 WP_215354939.1 MFS transporter -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38756.26 Da        Isoelectric Point: 4.9703

>NTDB_id=481707 C2759_RS09175 WP_046330807.1 1756557..1757645(-) (recA) [Polynucleobacter sp. MG-Unter2-18]
MALDDKRKSASSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYAYNGDRIGQGKDN
VREFLKENPAIAQDIEAKIRAKLGVKTGTAIVSDVLSEEEEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=481707 C2759_RS09175 WP_046330807.1 1756557..1757645(-) (recA) [Polynucleobacter sp. MG-Unter2-18]
ATGGCCTTAGACGATAAAAGAAAATCAGCCTCATCCGAATTTGACGGTATGAGTGGAGACAAGCAAAAGGCGCTTACTGC
GGCCTTAGCGCAAATTGAGAAGCAATTTGGTAAGGGCTCAATCATGAGATTGGGCGATGCAGAAATACATCAAGATATTC
AAGTAGTGTCGAGTGGCTCTTTGGGATTGGATATTGCCCTGGGAGTTGGGGGCCTAGCACGTGGCCGAGTGATCGAGATT
TATGGTCCAGAATCTTCAGGCAAGACCACGCTGACTTTGCATGCGATTGCAGAAATGCAAAAGATTGGCGGAACTTGTGC
CTTCATTGATGCGGAGCATGCTTTAGATGTTCAGTACGCTTCGCGTTTAGGTGTGGATGTGAACAACCTGTTGATCTCAC
AGCCAGATACTGGCGAGCAAGCATTAGAAATTGCAGACGCTTTGGTGCGTTCAGGCTCTATCGATTTAATCGTAATTGAC
TCTGTAGCGGCTTTAGTTCCAAGGGCGGAGATCGAGGGCGATATGGGTGATTCATTGCCTGGCCTCCAGGCTCGTCTGAT
GAGTCAAGCTTTGCGTAAATTGACTGGTGCAATCAAGCGTACCAATACAACCGTTATCTTCATTAACCAAATCCGTATGA
AGATTGGCGTGATGTTTGGTTCACCTGAAACTACTACTGGCGGTAATGCACTGAAGTTCTACGCCTCTATGCGTTTAGAT
ATTCGTCGTATCGGCAGCATCAAGAAGGGCGATGAAGTTGTTGGTAACGAGACCCGCGTGAAAGTGGTCAAGAACAAGGT
ATCTCCGCCATTCCGCGAGGCAATCTTTGACATCATGTACGGCGCTGGAATTTCTCGAGAAGGTGAAATTATCGATATGG
GTGTTGAGGCTGATATCGTTGAAAAATCAGGCTCTTGGTATGCCTATAACGGTGATCGCATTGGTCAGGGAAAAGACAAT
GTGCGTGAGTTCTTGAAAGAGAATCCAGCCATTGCCCAGGATATTGAGGCCAAGATTCGTGCGAAATTGGGAGTAAAGAC
TGGCACAGCGATAGTTAGCGACGTTCTGAGCGAAGAAGAGGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.109

99.171

0.785
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.16

0.671
  recA Acinetobacter baumannii D1279779

69.767

95.028

0.663
  recA Acinetobacter baylyi ADP1

69.186

95.028

0.657
  recA Pseudomonas stutzeri DSM 10701

69.617

93.646

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.725

90.331

0.63
  recA Vibrio cholerae strain A1552

69.725

90.331

0.63
  recA Glaesserella parasuis strain SC1401

69.969

89.227

0.624
  recA Helicobacter pylori 26695

64.431

94.751

0.61
  recA Helicobacter pylori strain NCTC11637

64.14

94.751

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

90.055

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.475

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

91.436

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.055

0.564
  recA Streptococcus mutans UA159

58.551

95.304

0.558
  recA Streptococcus pneumoniae D39

60.119

92.818

0.558
  recA Streptococcus pneumoniae Rx1

60.119

92.818

0.558
  recA Streptococcus pneumoniae R6

60.119

92.818

0.558
  recA Streptococcus pneumoniae TIGR4

60.119

92.818

0.558
  recA Streptococcus mitis NCTC 12261

59.821

92.818

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

93.923

0.552
  recA Streptococcus mitis SK321

59.76

91.989

0.55
  recA Lactococcus lactis subsp. cremoris KW2

60

91.16

0.547
  recA Streptococcus pyogenes NZ131

59.574

90.884

0.541